UFO01240.5prime Sequence
1191 bp (1048 high quality bases) assembled on 2008-07-17
> UFO01240.5prime
ATCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGT
CGACATGTCTTCGAAGTCGCCAAGCGAGCGCCGCCTACACAAAGAGCTGA
TGTCCCTGATCAAGGAGCCGCCACCAGGCGTAACCATCGACACCGAGAGC
GTACAACAAAATTTATCCGAATGGAAAATAAACATTAAAGGTTTCGAGGG
CACACTTTACGAGGGCGAGGACTTCCAGCTACTTTTCAAATTCAACAATA
AATATCCGTTCGATTCGCCAGAGGTGACCTTCATCGGCACCAATATACCG
GTGCATCCGCATGTCTACAGCAACGGACACATCTGCCTATCCATTCTGAC
CGAGGACTGGTCCCCGGCGCTGTCCGTGCAGTCCGTGTGCCTTAGCATAG
CCTCCATGTTGAGTAGTTGTCGCGAAAAGAAGCGTCCGCCGGACAACACG
ATATACGTAAAAACCTGTAATAAGAATCCTAAAAAGACTAAATGGTGGTA
CCACGATGATTCTGTTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGG
CCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAAC
TAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAA
AAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTG
AGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAA
TTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCA
TTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCC
AGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAA
AACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGG
TGAAACTCACCCAGGGATTGGCCTGAGACGAAAAAACATATCTCAATAAA
CCCTTTAGGAAATAGGCCAGGTTTTCACGTACACGCCACATCTGCGAATA
TATGTGTAGAACTGCGAATCGTCTGTATCACTCAGAGCGATGAACGTTCA
GTTGCTCATGAAAACGGTTACAGCGAACCCTATCCAATCCAGCACGCTCA
TGCCTACGATCCGATAGAACATCATCAGGCGGTCAAGAAAG
UFO01240.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7220-RC | 1672 | CG7220-RC | 208..669 | 55..516 | 2310 | 100 | Plus |
| CG7220-RA | 1771 | CG7220-RA | 307..768 | 55..516 | 2310 | 100 | Plus |
| CG7220-RD | 1742 | CG7220-RD | 278..739 | 55..516 | 2310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10737058..10737291 | 272..505 | 1170 | 100 | Plus |
| 2R | 25286936 | 2R | 10736893..10736997 | 171..275 | 525 | 100 | Plus |
| 2R | 25286936 | 2R | 10736655..10736748 | 77..170 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:59:24 has no hits.
UFO01240.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:51 Download gff for
UFO01240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7220-RD | 306..778 | 48..524 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:28:42 Download gff for
UFO01240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7220-RD | 306..778 | 48..524 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:57 Download gff for
UFO01240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7220-RD | 272..744 | 48..524 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:57 Download gff for
UFO01240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10736657..10736748 | 79..170 | 100 | -> | Plus |
| 2R | 10736893..10736995 | 171..273 | 100 | -> | Plus |
| 2R | 10737060..10737291 | 274..505 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:51 Download gff for
UFO01240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6624162..6624253 | 79..170 | 100 | -> | Plus |
| arm_2R | 6624398..6624500 | 171..273 | 100 | -> | Plus |
| arm_2R | 6624565..6624796 | 274..505 | 100 | == | Plus |
