UFO01242.5prime Sequence
1179 bp (1018 high quality bases) assembled on 2008-07-17
> UFO01242.5prime
CTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCG
ACATGAATCGCATTCTCGAGAAGGTGATTCACCAGAATGGAACAATCGTG
GATCGCATTCTATCGGAACATACTATTGGGTATGTGGTGTCCGATAACAC
AGCCAATGCGGTGGCCGAAACATCCTTCGATAACACAAGTGCCCAGGCGA
TCCTGAAGCACTTACATGGACTCCTGGTGAGCACCTGCCAAAGCGTAGTC
CGGGACATTGACCCGTCCAACAAACTCTGCTTCATGCGCCTGGGCACTCG
CAAGTTCGAGTATCTGGTGGCCCCAGAGGAGTACTTCACCATTACAGTGG
TTCAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGT
GGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAG
ATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGC
GGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACT
GGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGC
CCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACA
TGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAG
CACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGA
AGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACC
CAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAA
ATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTA
GAAACTGCCGGAAATCGTCGTGTATTCACTCCAGAGCGATGAAACGTTTC
AGTTTGCTCATGAAAACGGTGTAACAGGTGACACTATCCCATATCACAGC
TCACGTCTTTCATGCATACGACTCGATGAGCATCATCAGCGGCAGGATGT
GATACGCGATAAACTTGTGCTTATTTTTCTTACGTCTTAAAGCGTAATTC
AGCTGACGGTCTGGTTAGTACGTGACACTGACTGAATGCCTATGTCTACC
AGGCATGGATTATCACCGGTCATATCCAG
UFO01242.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31275-RA | 594 | CG31275-RA | 62..364 | 53..355 | 1515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16750971..16751273 | 355..53 | 1515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:44:38 has no hits.
UFO01242.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:25 Download gff for
UFO01242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31275-RB | 117..423 | 53..359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:29:09 Download gff for
UFO01242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31275-RB | 117..423 | 53..359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:31 Download gff for
UFO01242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31275-RA | 62..368 | 53..359 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:31 Download gff for
UFO01242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16750971..16751271 | 55..355 | 100 | -- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:25 Download gff for
UFO01242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12576693..12576993 | 55..355 | 100 | -- | Minus |
