UFO01244.5prime Sequence
1220 bp (1051 high quality bases) assembled on 2008-07-17
> UFO01244.5prime
AGATCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCA
GTCGACATGGATGTGGATAATGGCGAGGGGCAGGTGCAGGTGCACCTGAA
GACCAAGCAGGAGCATTATGCCGTGCCTGATGTGCCGTACGCCATCGATG
GCACCGTCACCACCGTGGAACTAAACACATTCGTGAACGCACTGTTGCGT
CAAAAAGATGGCTCTTCCGACACTGACTTCGACTTCCTGGTGTTCGATGA
GTACCTGCGCGGCCGGCTGTGCGATCACCTGCGCGAGAAAGCCATCAGTT
TCGAGGACGCCATCGAGATCGAGTATGTGGAGCGGTTCCCGGCGCCAGAG
CCACAGGATTGCCTGCTGCACGACGACTGGGTGTCCGCGGTGAAGGCTAG
AGGAAAGTGGATCCTCTCTGGGTGCTACGACAACACCCTGAATTTGTGGA
CCAACAAGGGCAAGCACATTCTCACTATTTCTGGTCACACGGCGCCCATC
AAGGCGGTGGACTGGATATCGCTGGACGAGGAGACGGGACGTTTTGTGTC
CACATCGCAGGATCAGACCGCCATGCTGTGGCAGTGGAACGTGGGCTCCA
ACTCGGTGGAATGTGTCTCCGTGTGCAAGGGCCACGAGCGAGGCGTCGAC
AGTGTCAGCGTGAGTCCGGATGGTCTGAGATTTGCCACGGGCTCTTGGGA
CACGATGTTGAAGGTGTGGTCAGCAGAGCTGGACGATGCAGTCGAGGGCA
GCTCAAAGCGGATGAAAGAGAGCGGTGTGAGAACCCCCAAAATTACGCTG
CAGGGACATCGTGAGAGCGTATCAGCCGTGCAGTGGATGGATGCTACCAC
TCTGCTAACTGGCAGCTGGGATCACACACTCAAGGTGTGGGATCTGAGTC
TTGAGGGCATCAAGACCGAAATATCCACCAACAAGTCCATATTCGATGCG
AGCTACTCAAGCTGATCGGCTGATACTGACTGCTTCGGCGGACAGATCTG
CGGCTCTATGATCCTAGGACAACCAGGGATCAGTGTAAGAATACCTATCT
GGGACACATGCTGGTGCAGAACGGTCATGTGTCCACCACGGAGGAGTTCT
TATTTGTCTCGGGCGCCTTATGACAACAGACAGCTGTGGACTGCAGGATT
CCAAGGCCATGTACGATCTTTGGTTCACGGTGAAGTTCTGGGAACACTGC
ACTGGTTTCCACATCTCCCA
UFO01244.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6724-RA | 1535 | CG6724-RA | 220..1365 | 57..1184 | 4990 | 96.9 | Plus |
| CG6724-RB | 1529 | CG6724-RB | 220..1359 | 57..1184 | 4890 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10768948..10769613 | 782..117 | 3225 | 98.9 | Minus |
| 2L | 23513712 | 2L | 10768647..10768890 | 1022..783 | 1040 | 98 | Minus |
| 2L | 23513712 | 2L | 10769675..10769733 | 115..57 | 280 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:25:27 has no hits.
UFO01244.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:25 Download gff for
UFO01244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6724-RA | 214..1335 | 49..1158 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:24:38 Download gff for
UFO01244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6724-RA | 226..1347 | 49..1158 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:06 Download gff for
UFO01244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6724-RA | 214..1335 | 49..1158 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:06 Download gff for
UFO01244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10768644..10768890 | 783..1024 | 97 | <- | Minus |
| 2L | 10768948..10769614 | 116..782 | 98 | <- | Minus |
| 2L | 10769675..10769739 | 49..115 | 94 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:25 Download gff for
UFO01244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10768644..10768890 | 783..1024 | 97 | <- | Minus |
| arm_2L | 10768948..10769614 | 116..782 | 98 | <- | Minus |
| arm_2L | 10769675..10769739 | 49..115 | 94 | == | Minus |
