UFO01245.5prime Sequence
1210 bp (1046 high quality bases) assembled on 2008-07-17
> UFO01245.5prime
GATCTGCGGCCGCATAACTACGTATAGCATACATTATACGAAGTTATCAG
TCGACATGAGCCACGGCGACCAGAGTCAAAACCAGAGCAGCCAGCGGAGC
CAGGCGCTCACTGGCGGTGGTGACTCCCCGAGGGACAGGGAGAAGGAAAA
GAAGGGCTGGTTCCACTCGCTGACCAGGCGCAAGAAGTCCGACTCGGCGC
TGGCCGTGACTGCATCCGCCGCCGTCTCCACCAGTGGATCGCAGAACAAC
AACAACGAAGTGTGCGTCCTTGAGGCAGCGGACTCTTCCATGGCCAGCTG
CAGCAATGGGGGCACGGGCACAGGAACTCTGCGCAGAAGGCGGGACAAGG
ACAAGCGAAACGTGTTTGCCAGACTACGAAGGAAGGTGGGCCAAGGGCTC
AGCTCCCTGCGAAACTGGCACTCCATGGGCGACTGCGACGACGGCGGAAC
TACTGATGCCACCTACGAGTTCCTTACGCCGGCCATCTGTCCGGAACCCA
CGCTACCATTCACACACGACTACTTGCGCTTTATCCGGAAGAAATGGCTT
GAGCGCGAGGACGCCCACTCGCCCAACCAGATCATGTACAAGGCCTGCTC
CGAGATGCTCAACCAAGTGTGGTACTGGGGTGAGATCTCCAGGCGCGATT
CGCAGCGGCAGTTGAGTGACAAGCCGACTGGGTCGTTTCTAGTCCGCGAC
TCGGAAACCAGCGGATCCCAATTCACGCTCAGCTTTCGGATTGTGAACGT
AACCCTGCATTATCGACTGGAATATCGCGACAATTTTTGGCACTTCGAGG
AACTTAAGTACGAGTCCATTGTCGAGATGATCGAAGATATCTTGCACCGC
TGCACCAACGACAACTTTGTGTGCTTTGTGAAGGTTCCCAACGAGATGCA
GCCACCGTTTCCAGTGATCCTCAAGTACCCGTTGAGCCGGTACTCCAACA
TGCCCAAGCTGCAGGACTTATGCCGCCGTGTTCTGCAGCGCAGATGTCTC
GCGAACAGCTGGCCCAGTTGCCAGTGCGGCGCAGATGCTGAGTACTTGTT
AGTGAGCGGGAGCTGTCTTCAGAGTGCAGCTTTCTAGATCATCGTTTGGC
CGCGCGGCCCAGGTAAGTGGTCATAATCATATCATAATCATAATCATATC
CACTAGCCTAGAGATCCTGGCCATGACTATGCTTGGAAATCTCACCATTA
AAAAGGTCTC
UFO01245.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Socs44A-RA | 1840 | CG2160-RA | 131..1156 | 56..1075 | 4950 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8127705..8128261 | 56..612 | 2785 | 100 | Plus |
| 2R | 25286936 | 2R | 8128324..8128780 | 613..1065 | 2055 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:23:17 has no hits.
UFO01245.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:56 Download gff for
UFO01245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Socs44A-RA | 122..1159 | 48..1079 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:29:39 Download gff for
UFO01245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Socs44A-RA | 66..1103 | 48..1079 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:15 Download gff for
UFO01245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Socs44A-RA | 122..1159 | 48..1079 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:15 Download gff for
UFO01245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8127696..8128261 | 48..612 | 99 | -> | Plus |
| 2R | 8128324..8128795 | 613..1079 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:56 Download gff for
UFO01245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4015201..4015766 | 48..612 | 99 | -> | Plus |
| arm_2R | 4015829..4016300 | 613..1079 | 97 | | Plus |
