UFO01246.5prime Sequence
1232 bp (1041 high quality bases) assembled on 2008-07-17
> UFO01246.5prime
CTGCGGCCGCATAACAACGTATAGCATACATTATACGAAGTTATCAGTCG
ACATGGGCTTTGATCTAAACTGCATTGTGGGCCACGTTGACGAGGAGCTC
ATCTGTCCAATTTGCACAGATGTCCTGGAGGAGCCGGTCCAGTCATCGGA
ATGCGAGCACGCCTTCTGTCGCGCCTGCATCGACAAGTGGATGATCCAGA
AACAGATTTGCCCGGTGGACCGCTCCGGGCTACTGACCTCACATCTGGTG
CCCGTTTCGCGCCTAATGCGCAACATGCTATCCCGCCTAAAGATCAAGTG
CACCTTCTCGCAAAGCGGTTGTGCCCAAATGCTGGCCCTCGAGGAGTTCC
GGACCCATGTCGCCGCCTGCGAGCATAATCCCAAGGTGGTTGTCGAGTGC
AGCAAGGGGTGCGGAATGAAGGTACCCAAGGACGAGATGTCGCGCCACAA
CTGTGTGTTCGAACTGCGCGAGCTGGTGGAGAAACTGGCGAAGGAGGTTT
CCGATCTGAAGCAGAAGCAATCCGATATGGAGGAGCAGAGCTCCAGCCAG
CGCCGAGAGATGGAGCTGTTCCAGTACTATATCGCAGCACTGCGATCGAC
CAATCCCATGCTGCGCAACATTGGCGAACAACTGGACCGCTTCTCACTGA
TGCAGTGGGGCCATGGACTCCCTCTGGCCAACATCCATACGTGGGGCAGT
CTGATCTCCACGCCGGACAATCCCATGCACCTGATGGTGCGCGACGTTTT
GCGTGAAAGCGGCTGTCCGATGCATATGCTCAATATGCTGGTTGAACGTT
GCCACGAGGATCGCTGGCCCGAAGGTCTGATGACGTTGGACGATCGCCGC
GAGAACCAACATCTCATGAGTCGGTATGTCACCCGATTGGTGCCCGGTCT
GGTCATTGGCAAACCGTGCGTGGTTGTTCTGGGCGGCGAAAACACCCACA
TGCCGGAGAATCTGCGCCCATCCTCGGACTGGTCATGATCTTCGTCGACG
GTGTGAATGAGTATATTTGGCGAAGAGATTATTGCAAGCTTTCTGAAGAT
TCGTTTGGCGCGCGGGCCCAGGTAGTGGTCATAATCATATCATAATCATA
ATCATATCACAACTAGCCCTAGGAGAATCCTGTATGACTAGTGCTGATTC
TCACACAATAAAACGCCGGGCGCAACGGAACGTCTGAACAAATTCGAATG
GATTCTCGGGAGAGGATCTTACATTTATCTGT
UFO01246.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9014-RB | 1377 | CG9014-RB | 154..1142 | 48..1033 | 4855 | 99.6 | Plus |
| CG9014-RA | 1368 | CG9014-RA | 145..1133 | 48..1033 | 4855 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13722396..13723013 | 1033..419 | 2960 | 99.4 | Minus |
| 2L | 23513712 | 2L | 13723067..13723442 | 423..48 | 1865 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:24:21 has no hits.
UFO01246.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:36 Download gff for
UFO01246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9014-RA | 145..1138 | 48..1039 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:23:38 Download gff for
UFO01246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9014-RA | 145..1138 | 48..1039 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:52 Download gff for
UFO01246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9014-RA | 145..1138 | 48..1039 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:52 Download gff for
UFO01246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13722391..13723010 | 422..1039 | 99 | <- | Minus |
| 2L | 13723069..13723455 | 35..421 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:36 Download gff for
UFO01246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13722391..13723010 | 422..1039 | 99 | <- | Minus |
| arm_2L | 13723069..13723455 | 35..421 | 97 | <- | Minus |
