UFO01249.5prime Sequence
1198 bp (1048 high quality bases) assembled on 2008-07-17
> UFO01249.5prime
GATCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAG
TCGACATGTCCGAACTGCAAGCATCGCTACTGCTCAATCGCCAGCTCTCC
GAATTACAACGCCATCCCGTCGAGGGCTTCTCCGCCGGTCTGGTCAGCGA
CTCCGACATCTTCAAATGGGAGGTGGTGATCATCGGTCCCCCAGATACGC
TATACGAGGGCGGCTTCTTCAAGGCTCACCTGATCTTCCCCAAAGAGTAC
CCACTGCGCCCGCCCAAGATGAAGTTCATCACCGAAATCTGGCATCCCAA
TATTGACAAGGCCGGCGACGTTTGCATCTCGATCCTCCACGAACCTGGTG
ACGATAAGTGGGGCTACGAGAAGGCCGAGGAGCGCTGGCTACCGGTCCAC
ACCGTGGAGACGATCCTTCTTTCCGTTATCTCCATGCTCACCGATCCCAA
TGACGAGTCGGCCGCCAATGTGGATGCGGCCAAGGAGTACCGGGAGAATT
ATGCGGAATTCAAGCGCAAGGTCACCAGGTGCGTCCGCCGTAGTCAGGAG
GAGGTGGAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGT
AAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTA
GGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCC
CGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCAT
TACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCC
CCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCC
GACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCA
TCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGG
GCGAAGAGTTGTCCATATTGGCCACGTTTAATCAAAACTGGTGAAACTCA
CCCAGGGATTGCTGAACGAAAACATATCTCATAAACCCTTTAGGGAAATA
GCAAGTTTTCACGTACCACGCCACATCTGCGAATATATGTGTAGACCTGC
GAATCGTCTGCATTCATTCGGAGCGATGAACGGTTCAGTGCCTGACGGTT
ACAAGGTGACCTATCAATATTACCAAGCTCACGGTCTTTTCGATTTGG
UFO01249.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ubc87F-RA | 660 | CG9602-RA | 72..578 | 53..559 | 2535 | 100 | Plus |
| CG40045-RB | 868 | CG40045-RB | 427..722 | 191..486 | 310 | 74.1 | Plus |
| CG40045-RA | 740 | CG40045-RA | 299..594 | 191..486 | 310 | 74.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13717536..13718042 | 559..53 | 2535 | 100 | Minus |
| 3L | 28110227 | 3L | 24035432..24035713 | 205..486 | 270 | 73 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:31:21 has no hits.
UFO01249.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:41 Download gff for
UFO01249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9602-RA | 58..578 | 41..559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:23:42 Download gff for
UFO01249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9602-RA | 48..568 | 41..559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:20:06 Download gff for
UFO01249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubc87F-RA | 58..578 | 41..559 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:20:06 Download gff for
UFO01249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13717536..13718043 | 51..559 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:41 Download gff for
UFO01249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9543258..9543765 | 51..559 | 99 | <- | Minus |
