UFO01250.5prime Sequence
1175 bp (1033 high quality bases) assembled on 2008-07-17
> UFO01250.5prime
TCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTC
GACATGATTGAGTCGGAGAAGTTGAGTGGGATATATGTGATACCCAGCTA
TGCTAACTCCTTGCAGTGGTTTGGAGTCTTCTTTGGCCGACAGGGCTTGT
ATGCGGAAAGTGTTTTTCGATTCACAATTTTGCTCCCAGATCGTTTTCCC
GACGACAAAAGTCTTCCGAGCATAATTTTCCAGCAGGATGTGATTCATCC
CCATGTGTGCCCGTACACCCACAGTTTGGACGTGAGCCACGCCTTCCCGG
AGTGGCGCTGTGGAGAGGATCACCTTTGGCAGCTTTTAAAGTACCTGCAA
GTCATTTTCTCCGATCCCTTGGACAGTATTCGGGGCATTGAGGTAGATAA
GCTCAAAAACAGCGAGGCTGCGGAGCTGCTGATGAATAACAAGGAGGAGT
ATGTTGCTCGCGTACAGGAAAATATCAAGGAGAGCAAGGAGCATATATTT
GACACCCCACCCACCGAAGATCCGCACTACATAGTATTCGAGAAGTTCCA
GCAGGACGTGCACGGGCCCGTTCTGGAGCGCATCAAGGCCGGAAGAAGCA
AGCTGACGGAGCCTTCAGCGCAACAAGCAAATGGTGGACATGCAACTGGT
CTGTCATGGGTTAAGGAGGGCGAGTTTAAGCCACTTAGCATTGAGGCAAG
CTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATC
ATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCA
TGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAG
CGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCA
ACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCCGCCCTGCCACT
CATCGCAGTACTGTTGTATTCATTAAGCATTCTGCGACATGCAGCATCAC
AAACGGCATGATGACCTGATCGCAGCGCATCAGCACTGTCGCTGCGTATA
TATTTGCCCATGTGAAACGGGGAGAGAGTGTCATATGCCACGGTTAAATC
GACTGGTGAACTCACCCAGAATGGCTGAACGATACATTTCCATACGTAGA
AATGGCAGTTCACCGGATAACAGGC
UFO01250.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cbx-RB | 908 | CG10536-RB | 184..825 | 54..695 | 3210 | 100 | Plus |
| cbx-RA | 1036 | CG10536-RA | 312..953 | 54..695 | 3210 | 100 | Plus |
| cbx-RC | 766 | CG10536-RC | 135..456 | 54..393 | 1420 | 94.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9864593..9865070 | 695..218 | 2390 | 100 | Minus |
| 2R | 25286936 | 2R | 9865124..9865227 | 218..115 | 520 | 100 | Minus |
| 2R | 25286936 | 2R | 9865290..9865350 | 114..54 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:03:41 has no hits.
UFO01250.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:00:53 Download gff for
UFO01250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbx-RA | 312..956 | 54..699 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:24:40 Download gff for
UFO01250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbx-RB | 165..809 | 54..699 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:03 Download gff for
UFO01250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbx-RA | 312..956 | 54..699 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:03 Download gff for
UFO01250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9864589..9865069 | 219..699 | 99 | <- | Minus |
| 2R | 9865124..9865227 | 115..218 | 100 | <- | Minus |
| 2R | 9865290..9865361 | 41..114 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:00:53 Download gff for
UFO01250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5752094..5752574 | 219..699 | 99 | <- | Minus |
| arm_2R | 5752629..5752732 | 115..218 | 100 | <- | Minus |
| arm_2R | 5752795..5752866 | 41..114 | 93 | | Minus |
