UFO01252.5prime Sequence
1222 bp (1076 high quality bases) assembled on 2008-07-17
> UFO01252.5prime
AGATCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCA
GTCGACATGTCAGATTCGACTATTTTCCGTTTTAACTCATCCATTCTTGA
TCAGTCAGCGGACAGCAACGTATCCAGTTCGAGCTCCAATTCCAGTGTAT
CCGACTCTTCTGTGGACTCCCATTCATCCATAGAATCCAATTCGGGACAC
AATACATCCGTGGAATCTCAGTCATCCGCGGAATCTGATTCATCCGCTGA
TTCCCATTCGTCCTTGGAACGCCCATCCCCAGTGGAGCGTGATTTATCTG
TGGAATCAGACTCATCTTCAGCCACCAATACCAGCGAATCTTCAGTCGGA
GAAGCTTCAAACCAACTGCAGTCACCGCAAAGCAATAACCCCTTAAATAT
GGCTAACTTGTCTGTCTCGACTGAAGATGCTCATTCGCAGATCAGATCAC
TTACCCAGGATGTGATCCAGATGGAAGCAGAGTTGGATCGCATGAATCGC
TACTGCGAGGAAGTTGTGGCACAGATTGACACCTTCGCCACGAGAACCTC
AACGCCAACAACTCGTAGAATTCGCCGCAGAACGAGTCCAGTAGAAGTGA
TAGATCTGTCCCATTTGGACCGTGCACCACCTGTTCGATCCGCTCGGAAT
CGTGATCCCGATGCTTTCATCGATCTATGCACCCCCGAAGGCCCAAGAAG
TCGCACAGTGAATCTTCACTCCAACGACTCCCTCACCATTCTGCCACGTC
GGTCAGCCGAAAATGACCCGGTAGTGGATCTCGACGTTGCGTCGCCACCA
AAACGCGTTAATCGCGACATTGATGAGTCCCAAAAAGAGGAGTTATACAA
GTGCCCCATCTGCATGGACAGTGTATCGAAGCGCGAGCCAGTGTCAACCA
AATGTGGACACGTCTTCTGCCGCGAATGCATCGAAACAGCCATCAGAGCT
ACGCACAAGTGCCCAATATGCAACAAGAAGCTGACCGCACGTCAATTCTT
TCGCATTTACTTGGCAAGCTTTCTAGACATCGTTTGGCGCGCGGGCCCAG
GTAAGTGGTCATATTCATATCATATCATATCATATCACACTAGGCTAGAA
TCTTGTCATGACTAGTGCTGCATTCTCCACAATAAAAAACGCCGGCGGCA
CGGACGTCGACATTCCGATGGATTTGAAGTCATACTGAATCTATCCACCG
GAGAGTCCAAGCGGAGACTCTC
UFO01252.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dgrn-RA | 1632 | CG10981-RA | 335..1291 | 57..1013 | 4785 | 100 | Plus |
| dgrn-RD | 1635 | CG10981-RD | 335..1294 | 57..1013 | 4745 | 99.7 | Plus |
| dgrn-RB | 1611 | CG10981-RB | 362..1270 | 105..1013 | 4545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5825805..5826235 | 583..1013 | 2155 | 100 | Plus |
| 3R | 32079331 | 3R | 5825036..5825444 | 84..492 | 2045 | 100 | Plus |
| 3R | 32079331 | 3R | 5825499..5825588 | 493..582 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:23:46 has no hits.
UFO01252.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:42 Download gff for
UFO01252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgrn-RA | 338..1310 | 52..1024 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:15:17 Download gff for
UFO01252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10981-RA | 338..1310 | 52..1024 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:42 Download gff for
UFO01252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgrn-RA | 328..1300 | 52..1024 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:42 Download gff for
UFO01252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5825499..5825588 | 493..582 | 100 | -> | Plus |
| 3R | 5825805..5826244 | 583..1024 | 99 | == | Plus |
| 3R | 5824942..5824975 | 52..83 | 94 | -> | Plus |
| 3R | 5825036..5825444 | 84..492 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:42 Download gff for
UFO01252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1650664..1650697 | 52..83 | 94 | -> | Plus |
| arm_3R | 1650758..1651166 | 84..492 | 100 | -> | Plus |
| arm_3R | 1651221..1651310 | 493..582 | 100 | -> | Plus |
| arm_3R | 1651527..1651966 | 583..1024 | 99 | == | Plus |
