UFO01254.5prime Sequence
1174 bp (1045 high quality bases) assembled on 2008-07-17
> UFO01254.5prime
ATCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGT
CGACATGAAAATGGTGTTGTCGCAGCGGCAGCGCGAGGAGCTTAACCAAG
CGATTGCCGATTATCTGGGCTCAAATGGCTACGCCGACTCATTGGAGACC
TTCCGCAAGGAGGCCGATCTCAGCACAGAAGTGGAAAAGAAATTTGGCGG
ACTGTTGGAAAAGAAGTGGACGTCCGTGATTCGGCTGCAGAAGAAAGTGA
TGGAACTAGAGGCTAAGCTCACTGAAGCTGAGAAGGAGGTCATCGAGGGG
GCGCCCACAAAGAACAAACGGACGCCTGGCGAGTGGATACCTCGGCCGCC
AGAGAAGTTCTCCCTGACCGGTCATCGTGCCAGCATAACGAGGGTAATTT
TCCACCCCATCTTTGCTCTTATGGTTTCCGCATCCGAAGACGCCACCATT
AGGATTTGGGACTTCGAAACTGGCGAGTACGAACGCAGCCTGAAGGGACA
CACGGACTCTGTGCAGGATGTCGCATTTGATGCCCAGGGCAAGCTTTTGG
CCTCCTGCAGCGCGGACTTATCCATCAAATTGTGGGATTTCCAGCAGAGC
TACGAGTGTATCAAAACTATGCATGGTCACGATCACAATGTCTCGTCGGT
GGCCTTTGTGCCGGCCGGAGATTATGTACTCTCTGCATCCCGGGACCGCA
CTATTAAAATGTGGGAGGTGGCCACAGGCTACTGTGTGAAAACCTACACA
GGCCATCGAGAGTGGGTGCGAATGGTGCGAGTGCACATCGAAGGCAGCAT
CTTTGCCACATGCTCAAATGATCAGACAATACGTGTTTGGTTGACGAATT
CAAAAGACTGCAAGGTTGAATTACGCGATCATGAGCATACTGTGGAGTGC
ATTGCCTGGCGCCGGAAGCCGCAGCCTCTGCGATAAACGAGCAGCCGGAG
CAGACACAAGAACGCCATCACCAGGGCCCGTTCCTGCTCGGCTCTCGCGA
CAAACATTCGCATTTGGGACGTGAGCGTCGCTGTGCTGCTACCCTGATGA
CATGACATGGTGCTGCTGCATTCATCTGTGCAATACTGCGTCGCAGATGA
CAGACATCGGGTGTGGACTTGCAAGCAGCATGAAGCATTACGCATCACAT
TCGGACCTCATAAATTTCCAAAGG
UFO01254.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lis-1-RG | 1675 | CG8440-RG | 125..1130 | 55..1047 | 4720 | 98.6 | Plus |
| Lis-1-RF | 3292 | CG8440-RF | 630..1635 | 55..1047 | 4720 | 98.6 | Plus |
| Lis-1-RB | 2775 | CG8440-RB | 113..1118 | 55..1047 | 4720 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16182158..16182462 | 93..397 | 1525 | 100 | Plus |
| 2R | 25286936 | 2R | 16182736..16182914 | 550..728 | 895 | 100 | Plus |
| 2R | 25286936 | 2R | 16182516..16182673 | 393..550 | 790 | 100 | Plus |
| 2R | 25286936 | 2R | 16182982..16183120 | 728..866 | 695 | 100 | Plus |
| 2R | 25286936 | 2R | 16183184..16183360 | 863..1030 | 495 | 93.2 | Plus |
| 2R | 25286936 | 2R | 16182053..16182090 | 55..92 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:24:09 has no hits.
UFO01254.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:23 Download gff for
UFO01254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lis-1-RB | 109..1118 | 47..1047 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:20:12 Download gff for
UFO01254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lis-1-RD | 246..1255 | 47..1047 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:45 Download gff for
UFO01254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lis-1-RB | 109..1118 | 47..1047 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:45 Download gff for
UFO01254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16182049..16182090 | 47..92 | 91 | -> | Plus |
| 2R | 16182158..16182458 | 93..393 | 100 | -> | Plus |
| 2R | 16182517..16182673 | 394..550 | 100 | -> | Plus |
| 2R | 16182737..16182914 | 551..728 | 100 | -> | Plus |
| 2R | 16182983..16183118 | 729..864 | 100 | -> | Plus |
| 2R | 16183186..16183381 | 865..1048 | 92 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:23 Download gff for
UFO01254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12070488..12070623 | 729..864 | 100 | -> | Plus |
| arm_2R | 12070242..12070419 | 551..728 | 100 | -> | Plus |
| arm_2R | 12069554..12069595 | 47..92 | 91 | -> | Plus |
| arm_2R | 12069663..12069963 | 93..393 | 100 | -> | Plus |
| arm_2R | 12070022..12070178 | 394..550 | 100 | -> | Plus |
| arm_2R | 12070691..12070886 | 865..1048 | 92 | -> | Plus |
