UFO01256.5prime Sequence
1213 bp (1048 high quality bases) assembled on 2008-07-17
> UFO01256.5prime
TCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTC
GACATGCCGATTCAGGCTCCCTCATGGACAGATTTTCTGAACTGTCCCAT
CTGCTGCAATGAATTCGCGGCCAGCCAGCGATGTCCGGTCAGTCTGGGCT
GCGGGCACACCATCTGCAAGCTATGCCTGACGACCCTCTACAACCGGCAG
TGTCCCTTCGATCAGACCGTGATTGTCAGTGACATCGACAATTTGCCCAT
CAACCATGCCTTGCTCCAGTTGGTCAAGGACTCGGAGCTCCTCGAGCTGG
CACCACCACCGCCCAGTGTGCAGAAGCTGGAGCCGGAGCACCTTAAGTGT
TACCAACTGGGTCAGCGGTGCATCGAGGAGCTGGCTTTGCACTTGAAGTC
CTTCCTCAACCTGAACGGAAATGGCAATCTTCTAACTCGACCCATGTTAC
GGAAACTGGTTACTCTGGTCAACTGCCAGCTGATGGAGGAGGAGGGACGG
GTGAGAGCGCTTCGAGCAGCCAGATCCCTAGGCGAACGCACAGTCACCGA
GCTGATCCTGCAGCACCAAAATCCCCAGCAGTTGAGCTCAAATCTGTGGG
CTGCAGTGCGGACAAGAGGATGCCAGTTCCTTGGACCCGCCATGCAGGAG
GAGGTGCTCAAACTGGTGCTGCTGGCCTTGGAGGAGGGATCAGCGCTTTC
GCGCAAAGTGCTGGTCATGTTCGTCGTGCAGCGACTAGAGCCGAAGTTTC
CCCAGGCCTCCAAGACGAGTATCGGACATGTGGTACAGCTGCTCTACCGC
GCCAGCTGCTTCAAGGTGTCCAAGCGGGAGGCGGACTCGTCGTTGATGCA
GCTCAAAGAGGAATTCCGTACGTATGACGCCCTACGCCGGGAGCACGATG
CCCAAATCGTTCAGATAGCCACCGAGGCGGGTCTGCGAATTGCACCGGAC
AATGGTCTTCCCTATTGTATGGCGACGTGATGCATAAAAGCCACATGCAG
AGCATCATCGATAAGCTGCAGACGCCAGCTCGTTTGCGCATCAGTCCAGG
ATGATCATCGCTTGCAGCGGACCAGCGATCTGCAAGCTATCAGTGCATCA
TCATCTGAGTACTGACCATATGATCCTGGTGCGGAGTGCCCGTGTCGTAG
CTGAGCTGATGCAGTGCCGCATCGGTCGGTGAGGACTGTGTAACTTTCTT
TTAGAACACGCCA
UFO01256.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:09:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roq-RB | 3901 | CG16807-RB | 136..1234 | 53..1136 | 5065 | 98.2 | Plus |
| roq-RC | 6179 | CG16807-RC | 136..1234 | 53..1136 | 5065 | 98.2 | Plus |
| roq-RA | 4680 | CG16807-RA | 136..1234 | 53..1136 | 5065 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:09:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16376140..16377014 | 1080..212 | 4080 | 99.1 | Minus |
| 3L | 28110227 | 3L | 16377076..16377238 | 215..53 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:09:31 has no hits.
UFO01256.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:35 Download gff for
UFO01256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| roq-RA | 220..1308 | 53..1126 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:20:14 Download gff for
UFO01256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| roq-RA | 220..1308 | 53..1126 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:36 Download gff for
UFO01256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| roq-RA | 136..1224 | 53..1126 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:36 Download gff for
UFO01256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16376085..16377010 | 216..1126 | 98 | <- | Minus |
| 3L | 16377076..16377241 | 46..215 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:35 Download gff for
UFO01256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16369185..16370110 | 216..1126 | 98 | <- | Minus |
| arm_3L | 16370176..16370341 | 46..215 | 97 | | Minus |
