UFO01257.5prime Sequence
1203 bp (1052 high quality bases) assembled on 2008-07-17
> UFO01257.5prime
GATCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAG
TCGACATGGATGAAAAGGAACACGAATTGTCGACGAGGGTGGTGAAAAAC
GAGGAGAACGAGGATGACGAGAAGCTCAATGAGTTATCCTTTTGTTTTGT
TCGGGGTTCAGATCCACGAGCTGCCACTTGTCGTAGCAAACTCCAAAACA
GGCGATGCAAATTAAACAAAGAAATAAATAAGGAACTCCGCCTTCGAGCT
GGTGCCGAGAATCTATATAAGGCCACATCGAATCGCAAACTGCGCGACAC
AGTTGCCTTGGAATTAAGCTTTGTCAACTCAAATCTGCAACTGCTGAAGG
AGCAACTGGCCGAGTTGAATTCGTCGGTGGAAATCTATCAGAGCGAAAGT
CACAATGGAATTATGCCCATGATACCGCTGGGCCTGAAGGAAACCAAGGA
GATCAATTTCATGGAACCCTTCTCCGACTTCATCCTGGAACACTACAGCG
AGGAGCCCTCGATGTACATAGATGCCATAGCTGATATGACGGACACGAGA
CAGGCATCCAAAACACCGTCACGAGATGCCCTGGGAGTGGCCCTACTTTT
CCGCTACTACAACACGCTGTATTACGTGGAGCGTCGCTTCTTTCCGCCGG
ATCGTAACCTGGGCGTGTACTTCGAGTGGTACGACTCGCTCACGGGAGTT
CCCTCGTGCCAGCGGACCATCGCGTTCGAGAAAGCCTGCACCCTGTTCAA
TCTGGGCGGCATATATACACAGATCGGCGCTCGACACGATCGCACGACGG
AACGGGGTCTTGACTTGGCCGTGGATAGTTTTTTACGGGCCGCCGGGGTC
TTTCGTCACATCTACGATACGTTCACGAATGCACCATCGATGGACCTGAA
GCCACAGGTCCTGGACGTGCTCGTTTCCCTGATGCTTTCCCAGGCACGAG
ATGCCTCTTTGAGAAGCTTCAGCTGCAGATCGAGGCGATGAGCACGATGC
CAGCGTTTCGGGATCTGGCTGGCGAGCTGCTCAAATATCGCACGAGTACA
TGAGATGTACAAGAATATCAGGCGACGATACGCCACACCTATTCTTCGAT
GCTGGGTGGTCTAGTGCCAGGTCAGCCGACTCTACAAGCATCGCACTTCT
CAGCCGACATAATGCGCAGACGACGTAAGCATCAGGTCAGTCCAGACCAG
GAT
UFO01257.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:10:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rhp-RA | 2381 | CG8497-RA | 104..1179 | 55..1120 | 5020 | 98.5 | Plus |
| Rhp-RB | 2536 | CG8497-RB | 259..1334 | 55..1120 | 5020 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:10:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15791460..15791902 | 552..993 | 2165 | 99.8 | Plus |
| X | 23542271 | X | 15791241..15791397 | 398..554 | 785 | 100 | Plus |
| X | 23542271 | X | 15790977..15791106 | 270..399 | 650 | 100 | Plus |
| X | 23542271 | X | 15790742..15790860 | 154..272 | 595 | 100 | Plus |
| X | 23542271 | X | 15790289..15790389 | 55..155 | 505 | 100 | Plus |
| X | 23542271 | X | 15792000..15792068 | 1003..1069 | 230 | 95.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:10:22 has no hits.
UFO01257.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:03 Download gff for
UFO01257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rhp-RB | 259..1353 | 55..1137 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:27:05 Download gff for
UFO01257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rhp-RA | 108..1202 | 55..1137 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:00 Download gff for
UFO01257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rhp-RB | 259..1353 | 55..1137 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:00 Download gff for
UFO01257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15790289..15790388 | 55..154 | 100 | -> | Plus |
| X | 15790743..15790859 | 155..271 | 100 | -> | Plus |
| X | 15790979..15791106 | 272..399 | 100 | -> | Plus |
| X | 15791243..15791396 | 400..553 | 100 | -> | Plus |
| X | 15791462..15791902 | 554..993 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:03 Download gff for
UFO01257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15684322..15684421 | 55..154 | 100 | -> | Plus |
| arm_X | 15684776..15684892 | 155..271 | 100 | -> | Plus |
| arm_X | 15685012..15685139 | 272..399 | 100 | -> | Plus |
| arm_X | 15685276..15685429 | 400..553 | 100 | -> | Plus |
| arm_X | 15685495..15685935 | 554..993 | 99 | -> | Plus |
