UFO01258.5prime Sequence
1236 bp (1061 high quality bases) assembled on 2008-07-17
> UFO01258.5prime
TCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTC
GACATGTCCGCGTCAGTAAGAAATACAGTCACTAGCCAAGAAAATGGGAG
TATCTTTAAACGGTCCAGTAACTTAGACAACGAACTCAAAAAGAAGTCCG
TGGTGGTTAATCAGACACAAGCCGAAGAGTCTAAGGCTAAGAAGAAAGAT
ACTACGCACTATTACAGTGTGGAAACACTTGCCGACCTGCAGTATCGATC
TCAGATAAAGGTTTTGGAAAAGATCTATGGCGAGGAGGTTGATATGACAC
CTAAGTCGATCCAAGATGACACCTATGTGGAGCAGTTCATGAAGTACAAC
CTAAATGTCATGCACCAAATGACTAACTTCACTACAATGGTAGCGAAGAG
CACGACCAGATCCCGCACGCGGTCTAGTGTTCGGGCCGGAATAGGCGGCA
ATAAGCAGTCCATTGACGACCTGATGAACGGGATACTTTATGAAACTATT
AACTGGGAACCGTACAGCACTGTTGAGGCTCTCGAAGAGGCGTACGAGCC
AAAGCCGTATACCAAGTCCTTTTTAAAGATCACCTTACGCAAGTCTGACT
TCTTCGAAATTCACAGCCAGACGCAGACGACGGTGGCCAAGGGATCGCCC
GAGGGCGACGATGCGGAGCGAGACAACCGAAACTACGAGTATCTGACAAT
AGGGAAAGGCAAAATTCGCCGGCGCTCAGACAATGACGCTCAGACAGATA
CTCTGCTCTTCACCACTCGGGCAGTCAACACCATCCTCATAACCAAGGCC
ACCGTCAGCTCTTACGTTTCCAACTTTGAGATGTACGACACGCTGAACAA
TATCACCAAGGAGTTCGCAACAGCCACTATGAGTTCGGTAAAGGACCTGA
CCTCGGCTCTAGCGCAGACGGAGGATGCGGATACCTTTGAGGACGACGAG
GCCGTTGCCGAAAAGACAGTCAGCAGCCAGATAGAGCGCCTGTCCGGAGC
CCGAGTTCGCAACGCATCATGTACATGGGCCGCACGCTCTCGTGCCAACA
CAAACGAGGCGGGATACGACGCTCGTACTTTGACAGTGACGCTGACGCGG
AAGCGAGTACGTCTACTCGATGACTTGCTCTTTCGCTGTACGGACCAGCA
AGACAGTAGGCCTTAGCACATGATTCCGCGCGCGCAGCACATGGGTAACA
CTCTCTGTGCCGTGTAGACCTCATAACCGGGAAAAC
UFO01258.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dic61B-RA | 2616 | CG7051-RA | 192..1292 | 53..1135 | 5005 | 97.9 | Plus |
| Dic61B-RB | 2642 | CG7051-RB | 276..1318 | 111..1135 | 4715 | 97.8 | Plus |
| Dic61B-RB | 2642 | CG7051-RB | 192..249 | 53..110 | 290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 151204..151791 | 1063..482 | 2565 | 98.5 | Minus |
| 3L | 28110227 | 3L | 151848..152071 | 482..259 | 1120 | 100 | Minus |
| 3L | 28110227 | 3L | 152121..152272 | 262..111 | 760 | 100 | Minus |
| 3L | 28110227 | 3L | 152341..152398 | 110..53 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:40:58 has no hits.
UFO01258.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:09 Download gff for
UFO01258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dic61B-RA | 189..1313 | 47..1151 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:20:10 Download gff for
UFO01258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7051-RA | 189..1313 | 47..1151 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:31 Download gff for
UFO01258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dic61B-RA | 189..1313 | 47..1151 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:31 Download gff for
UFO01258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 151848..152069 | 261..482 | 100 | <- | Minus |
| 3L | 152123..152272 | 111..260 | 100 | <- | Minus |
| 3L | 152341..152401 | 47..110 | 95 | | Minus |
| 3L | 151099..151790 | 483..1151 | 95 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:09 Download gff for
UFO01258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 151099..151790 | 483..1151 | 95 | <- | Minus |
| arm_3L | 151848..152069 | 261..482 | 100 | <- | Minus |
| arm_3L | 152123..152272 | 111..260 | 100 | <- | Minus |
| arm_3L | 152341..152401 | 47..110 | 95 | | Minus |
