UFO01260.5prime Sequence
1207 bp (1063 high quality bases) assembled on 2008-07-17
> UFO01260.5prime
TCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTC
GACATGGCGCTGGTGGATCACGATTCCTGGGACATCGAGTACGAGGGCTG
CGAGCGACTGCGGCATCAGCTGCTGGTATACCTCAACCAGCGGCAGCAGC
TCAATCCGAGGACGAGCCAGTTCGTCCAACTGACAAGCAGCATTCAGACG
GGAATAGAGCAGCTGGCCAAGGACATGAAGCACCTCAAGGTGGTGCTGGA
CAACGCCATCACCTGGGAGACGAGCCCGGAGGAGGAGCTGCAACAGCGGC
GCATCGACTGGGATAGACTTACTTCGCAGCTGCGCGAGATCCGCGAGAAG
TTCGCAAACAGTAGCCGCTCCAATGTCCCGGCCGCATCCGGTTCTGCTTG
GCAGGATCAGGATCTCGGCCCAGGTCACAGCAATTCCTCGCGGAATACCG
CCTTGGATGTGGAGGCTCTGAAGCAGAAAAAGACCGAGATGCTGGCGCAG
CAGAACGAAGGACTCGAGGTTCTATCAGCCACATTGTCCAGACAGCGCCA
ACTGGCCACACAGCTGGGCAACGAGGTGGAGGACCAGAACAATATCCTTG
ACAACTTGGCCAATGCCATGGACCGTGTGGAAACGGGTGTGCAGCGGGAA
ACACAGAGCATTGGACAGGTTAACCGGCGGGACAGTACCTGGGGCTACTG
GCTCGTCATCATAGCCTTGTTCGTCGCCATCATTGTCGTGGTCTTCGTCG
CAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCAT
AATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTG
GTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAAC
CGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCT
ATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCCGCCCTGC
ACTCATCGCAGTACTGTGTATTCATTAGCATTCTGCCGACATGGAGCCAT
CACAACGGCATGATGACCTGAATCGCCAGCGGCATCAGCACCTGTCGCCT
TGCGTATATATTTGGCCATGTGAAACGGGGCCAGAAGTGTCCAATGCCGG
TTTATTCAAGCTGGTGAACTCACCAGGGGAATTGGCCTGGAACACAAAAA
CCTTTGT
UFO01260.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syx8-RA | 897 | CG4109-RA | 80..775 | 54..749 | 3480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16586441..16586978 | 591..54 | 2690 | 100 | Minus |
| 3L | 28110227 | 3L | 16586230..16586387 | 749..592 | 790 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:32:04 has no hits.
UFO01260.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:16 Download gff for
UFO01260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx8-RA | 73..780 | 46..756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:29:59 Download gff for
UFO01260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx8-RA | 115..820 | 46..750 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:27 Download gff for
UFO01260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx8-RA | 73..780 | 46..756 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:27 Download gff for
UFO01260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16586225..16586387 | 592..756 | 98 | <- | Minus |
| 3L | 16586441..16586985 | 46..591 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:16 Download gff for
UFO01260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16579325..16579487 | 592..756 | 98 | <- | Minus |
| arm_3L | 16579541..16580085 | 46..591 | 99 | <- | Minus |
