UFO01262.5prime Sequence
1207 bp (1054 high quality bases) assembled on 2008-07-17
> UFO01262.5prime
CTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCG
ACATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAG
GTCGAACCGTCGGATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAA
AGAAGGAATTCCTCCAGATCAGCAGCGTCTGATCTTCGCTGGCAAGCAGC
TGGAAGATGGCCGCACCCTCTCTGACTATAACATTCAGAAGGAGTCCACT
TTGCACTTGGTGCTCCGCCTGCGTGGTGGTGCCAAGAAGCGCAAGAAGAA
GAACTACTCCACTCCCAAGAAAATCAAGCACAAGAGGAAGAAGGTCAAGC
TAGCTGTCCTGAAATACTACAAGGTTGACGAGAACGGCAAGATCCACCGT
CTCCGTCGCGAGTGCCCTGGTGAGAACTGCGGCGCCGGCGTCTTCATGGC
TGCCCACGAAGATCGTCACTACTGCGGCAAGTGCAACCTGACCTTTGTCT
TCAGCAAACCAGAGGAAAAGGCAAGCTTTCTAGACCATTCGTTTGGCGCG
CGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCA
CAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAA
TAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGT
TCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATAT
CAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTA
AGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGATC
GCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGT
GAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAAC
TGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATA
AACCCTTTAAGGGAAATAGCCAGTTTTCACCGTACACGCCACATCTTGCG
AATATATGTGTAGAACTGCCGAAATCGTCGTGTTATCACTTCGAGCGATG
AACGTTCAGTGGCTCATGAAACGGGTAACCAGGGTGAACCAATCCAATAC
AACAGCTTCACGTCTTCATGGCATAATCCGAATTCCGGAAGTAGAACATT
CTACTCA
UFO01262.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS27A-RA | 592 | CG5271-RA | 56..523 | 53..520 | 2340 | 100 | Plus |
| RpL40-RB | 659 | CG2960-RB | 123..350 | 53..280 | 705 | 87.8 | Plus |
| RpL40-RA | 587 | CG2960-RA | 65..292 | 53..280 | 705 | 87.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10409731..10410053 | 53..375 | 1615 | 100 | Plus |
| 2L | 23513712 | 2L | 10410239..10410387 | 372..520 | 745 | 100 | Plus |
| 2L | 23513712 | 2L | 4228025..4228252 | 53..280 | 705 | 87.3 | Plus |
| X | 23542271 | X | 6277382..6277609 | 279..52 | 585 | 83.8 | Minus |
| X | 23542271 | X | 6277610..6277837 | 279..52 | 585 | 83.8 | Minus |
| 3L | 28110227 | 3L | 3900848..3901075 | 280..53 | 585 | 83.8 | Minus |
| X | 23542271 | X | 6277149..6277381 | 284..52 | 580 | 83.3 | Minus |
| X | 23542271 | X | 6278294..6278521 | 279..52 | 570 | 83.3 | Minus |
| X | 23542271 | X | 6278522..6278748 | 279..53 | 565 | 83.3 | Minus |
| X | 23542271 | X | 6277838..6278065 | 279..52 | 555 | 82.9 | Minus |
| X | 23542271 | X | 6278066..6278293 | 279..52 | 555 | 82.9 | Minus |
| X | 23542271 | X | 6282957..6283184 | 279..52 | 540 | 82.5 | Minus |
| X | 23542271 | X | 6282729..6282956 | 279..52 | 510 | 81.6 | Minus |
| X | 23542271 | X | 6282501..6282728 | 279..52 | 480 | 80.7 | Minus |
| X | 23542271 | X | 6282306..6282500 | 246..52 | 450 | 82.1 | Minus |
| X | 23542271 | X | 6280764..6280882 | 171..53 | 220 | 79 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:55:18 has no hits.
UFO01262.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:09 Download gff for
UFO01262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS27A-RA | 56..529 | 53..529 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 16:24:24 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:44:14 Download gff for
UFO01262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS27A-RA | 56..529 | 53..529 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:44:14 Download gff for
UFO01262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10409731..10410051 | 53..373 | 100 | -> | Plus |
| 2L | 10410241..10410387 | 374..520 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:09 Download gff for
UFO01262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10409731..10410051 | 53..373 | 100 | -> | Plus |
| arm_2L | 10410241..10410387 | 374..520 | 100 | == | Plus |
