UFO01263.5prime Sequence
1193 bp (1058 high quality bases) assembled on 2008-07-17
> UFO01263.5prime
ATCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGT
CGACATGTCTCTGGAGGATCCGTTTTTCGTGGTCAAGGACGAGGTATTCA
AAGCTCTGAACAAAACCCGCGGCCTCTATCTGCGTTGGCGGGAGCTGGGC
GAGAACGGCGGAACGGAGGCTGAATGGACCACCACCGAGCTGCGTAACTC
GCTACGGAGCATCGAGTGGGATCTCGAGGACCTCGAGGACACTATCAGCA
TCGTTGAGAAGAATCCAAGCAAGTTTCGGATCGACAACCGCGAACTCTCC
AGCCGGCGCCACTTCATCGACAACACTCGCGATGAGGTCAAGCAGATGAA
GGATAAGATGAGCCTGAACCGGAGCCGGGACAGAGACATCACCGCACACC
AGCCGCTGCTCGACAACGATCGCCACAGCCCCAATCACAATCATTCCATT
GCCATACCCAATTCGAATTCCAACTCCAACGAGTACCATCAGCATCCACA
CAACGATCGCACGTACCTCGTGGAGTGTCCCAACGGCAACTCGCTGATCA
ATAGCGGCAGTCAGGTGGCCAATACCATAGCTGGGACCATGTCGGCGGCA
GCGGCAGCAGCATCCCGCCACAGCGGCACCAAGTACTCCAAGCTGGAGAA
CGCCCTGGACAGTCCCAGTCACTATGGGCAGACGCATCACGGCGGCATGG
ACAGTCCGAGTCATAGGTACGTGGGCGACACAGTGTCCATACAGCAGCGT
ATGATCCAGGGACAGGATGAGCAGCTAGACATGATCAGCGATTCGATTGG
TACCCTCAAGACGGTCTCGCGGCAAATTGGCGTTGAGCTCGATGAGCAGG
CCGTCATGCTAGACGACTTTGGGAACGAGTTCGATACCACGGAGTCCAAG
TTGGATACGACCATGAAGAAAGTTGCCAAAGTCTTGCACATGAATAATGA
TAAACGACAGTGGGCCGCCATTCTCATCCTATCCGGACTGTATGTTTGTG
ATATTTTGTTATTATTTGGCAAGCTTTCTAGACATTCGTTTGGCGCGCGG
GCCCAGGTAGTGTCATATCATAATCATATTCATATCATATCACACTAGCT
AGGGATCTGTCATGACTATGCTGCATCCCCACATAAAACGCCGGCGGCAC
CGAGCGTCTGGAACAAATCGAATGGGAGTCTCTGTGAAGGCTC
UFO01263.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syx6-RD | 1982 | CG7736-RD | 390..1357 | 54..1017 | 4725 | 99.5 | Plus |
| Syx6-RB | 1361 | CG7736-RB | 175..1106 | 90..1017 | 4545 | 99.5 | Plus |
| Syx6-RE | 1945 | CG7736-RE | 531..1462 | 90..1017 | 4545 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11220928..11221629 | 248..949 | 3495 | 99.9 | Plus |
| 2R | 25286936 | 2R | 11220464..11220621 | 90..247 | 790 | 100 | Plus |
| 2R | 25286936 | 2R | 11221783..11221825 | 949..991 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:23:36 has no hits.
UFO01263.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:38 Download gff for
UFO01263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx6-RD | 387..1362 | 51..1022 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:16:09 Download gff for
UFO01263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx6-RD | 385..1360 | 51..1022 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:36 Download gff for
UFO01263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx6-RD | 387..1362 | 51..1022 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:36 Download gff for
UFO01263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11220464..11220615 | 90..241 | 100 | <- | Plus |
| 2R | 11220922..11221629 | 242..949 | 99 | -> | Plus |
| 2R | 11221784..11221860 | 950..1022 | 92 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:38 Download gff for
UFO01263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7107969..7108120 | 90..241 | 100 | <- | Plus |
| arm_2R | 7108427..7109134 | 242..949 | 99 | -> | Plus |
| arm_2R | 7109289..7109365 | 950..1022 | 92 | == | Plus |
