UFO01264.5prime Sequence
1202 bp (1045 high quality bases) assembled on 2008-07-17
> UFO01264.5prime
GATCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAG
TCGACATGCTGGCTGTGAGATTGGCCAATTTGCCATGCGTTAAATGCCTT
CTGGCGGCCAAATGCAATGCGACCTATGAGTACGAAGGCTGGTCGATTGT
CCAGGAAGCGGTCTGCACCGGCGATGTGGACATACTGACGGCCATCATCG
AAGTCCGGGATCTCCAGCGTCATGTCCAGCGGGTTACGCATGTGCCTAAG
CTGCTGCAGCACCTATTGGACGCACCAGATTTCTACATCGAGATGAAGTG
GGAATTCACCTCCTGGGTGCCTCTGATGTCGCGTCTCTGTCCCAGCGACA
CCTACAAGGTCTACAAGCGGGGAGCCAACGTCCGGATAGATACCACCCTG
CTGGGCTTCGACAACAACACCTGGCAACGGGGCAATCGCTCTTACATCTT
CAAGGGGGCCAAAGAAACTGCCACGATGATCGAGATCGATCACGATACAA
ACGAAGTAATGGTGGAGGAGATGAGCAGCGATATCGGTGATATTGTGGCC
ATTCCACCAGCCTTGGGCACCGTGAGGGCGCGCCTCAATGCCCCGGTGAT
CACGAACAACATCGAGATGGACAAGATTAGCTTCGAGCGCAACAAGTGCG
GCATATGGGGATGGCGTAGCGAGAAATCTGAGATGATCAACGGCTACAAC
TGCAAGGTGTATGGGGCCAGCAACGTGGAGTTTGTTACAAAGACGCGAAT
GGATCACCTTAGCGAGGAGCAAATTAAGAACAAGACAGCGAGGACTCCAC
TGCATAGCCTGCTGGGAATTGCTGATGAGGATTATGTGTCACCCGCTGAT
GCTGCTGCGGCACTAAAAGATCGTACACCATCGCCCCGGTTGGAGGAAGC
TTCCAACGCTGGAGTTGAAAATGGTGGCCGAAACTCACCAGCCCCTGTAA
ATCAAAGCAACGGAAGCTCCGCGGGTGCGTCGGGCACAGTACTCAAAGTC
TTCTGTTACTCGGAGGAGTATTTTACTCAGAGTTTGATCTCACGGAGGAT
GTGCGTCCCAGACTGAGCACAAAGTGCACGCTTAAAGCACTTATGCTAGC
GAGGAGCATCAATCACTGCAGAACGGTGCCTCATTCGGATCAGTTCACAT
GGCGTCCAATGTGTTCAGCGTGAAGACACCTTATCACACAATGTGCAACT
GT
UFO01264.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:17:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15118-RE | 2823 | CG15118-RE | 262..1336 | 56..1110 | 4870 | 97.9 | Plus |
| CG15118-RD | 2345 | CG15118-RD | 79..1153 | 56..1110 | 4870 | 97.9 | Plus |
| CG15118-RB | 2528 | CG15118-RB | 262..1336 | 56..1110 | 4870 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:17:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19135939..19136255 | 778..462 | 1585 | 100 | Minus |
| 2R | 25286936 | 2R | 19136323..19136637 | 461..147 | 1575 | 100 | Minus |
| 2R | 25286936 | 2R | 19135456..19135625 | 1040..875 | 635 | 97.1 | Minus |
| 2R | 25286936 | 2R | 19135685..19135786 | 874..773 | 495 | 99 | Minus |
| 2R | 25286936 | 2R | 19136695..19136785 | 146..56 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:17:54 has no hits.
UFO01264.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:19 Download gff for
UFO01264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-RB | 257..1310 | 48..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:30:51 Download gff for
UFO01264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-RB | 255..1308 | 48..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:32 Download gff for
UFO01264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-RB | 257..1310 | 48..1088 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:32 Download gff for
UFO01264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19135467..19135625 | 875..1030 | 97 | <- | Minus |
| 2R | 19135685..19135780 | 779..874 | 100 | <- | Minus |
| 2R | 19135939..19136255 | 462..778 | 100 | <- | Minus |
| 2R | 19136323..19136637 | 147..461 | 100 | <- | Minus |
| 2R | 19136695..19136790 | 48..146 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:19 Download gff for
UFO01264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15022972..15023130 | 875..1030 | 97 | <- | Minus |
| arm_2R | 15023190..15023285 | 779..874 | 100 | <- | Minus |
| arm_2R | 15023444..15023760 | 462..778 | 100 | <- | Minus |
| arm_2R | 15023828..15024142 | 147..461 | 100 | <- | Minus |
| arm_2R | 15024200..15024295 | 48..146 | 95 | | Minus |
