UFO01265.5prime Sequence
1190 bp (1040 high quality bases) assembled on 2008-07-17
> UFO01265.5prime
CTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCG
ACATGGACTGGCTATTCGGCAAGAAGATCAGCCCCGATGAGATGCTGCGT
AAGAATCAGCGGGCGCTCAACAAAGCGATGCGAGATCTGGACCGCGAGCG
GATGAAAATGGAGCAGCAGGAGAAGAAGATTATCGCGGATATCAAGAAGA
TGGCCAAGGAGGGTCAAATGGATGCCGTGAAGATCATGGCCAAGGATCTG
GTGCGCACGCGGCGGTATGCCAAGAAGTTCATGCTGATGAAGGCAAACAT
CCAGGCGGTGTCCCTCAAAATTCAGACGCTCAAGTCGCAGAACACAATGG
CACAGGCCATGAAAGGTGTCACGAAGGCCATGCAGAACATGAACCGCCAG
CTGAATCTCCCGCAAATCCAGAAGATCCTGCAGGACTTCGAGAAACAGTC
GGAAATGATGGACATGAAGGAGGAGATGATCAACGATGCCATCGATGACG
CCATGGAGGACGAGGGCGACGAGGAGGAGACGGATGCTGTTGTGTCCCAG
GTGCTGGACGAACTGGGTCTGCAATTGGGCGAACAGCTGGGAGACCTTCC
TTCCGCCTCCGGTTCCCTTTCCATAGCCGGCGGCGCTGGCGCTCAGAAAG
CACAGGCTGTGGCCGCTGGTGGCGTTGGCGGCGGTGGAGCCGCCGGCGGA
GGTGGAGCTAGTGGTGGCGGCGCTGGTGGTCCGGGAGCTCCCGGTGGCAG
TGGTGCCTCATCGCCCATGTCCGATGCCGATGCGGATCTTCAGGCGCGCC
TGGATAAGCTGCGCAAGGATGCAAGCTTTCTAGACCATTCGTTTGGCGCG
CGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCA
CAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGATTCTCACCAAT
AAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAATCCAGATGGAGTTC
TGAGTCATTACTGATCTATCACAGGAGTCAAGCGAGCTCGATTATCCAAT
TACGCCCGACTGCCACTCATCGCAGTACTGTTGTATCATAGCATTCTGCG
AAATGCAGCATCCAACGCATGATGACTGAATTGCAGCGATCAGACTTGTT
CGCTGGCTTAATATTTGCCAATGGGTGAAAACACGGGGGC
UFO01265.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps2-RA | 1248 | CG14542-RA | 95..864 | 51..820 | 3850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26053288..26053744 | 364..820 | 2285 | 100 | Plus |
| 3R | 32079331 | 3R | 26052915..26053231 | 51..367 | 1585 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:31:18 has no hits.
UFO01265.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:38 Download gff for
UFO01265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vps2-RA | 86..869 | 42..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:24:43 Download gff for
UFO01265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14542-RA | 82..865 | 42..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:20:04 Download gff for
UFO01265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps2-RA | 86..869 | 42..826 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:20:04 Download gff for
UFO01265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26052906..26053229 | 42..365 | 98 | -> | Plus |
| 3R | 26053290..26053749 | 366..826 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:38 Download gff for
UFO01265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21878628..21878951 | 42..365 | 98 | -> | Plus |
| arm_3R | 21879012..21879471 | 366..826 | 99 | == | Plus |
