UFO01269.5prime Sequence
1220 bp (1046 high quality bases) assembled on 2008-07-17
> UFO01269.5prime
ATCTGCGGCCGCATAACAACGTATAGCATACATTATACGAAGTTATCAGT
CGACATGGGCAAGGAAAAGATTCACATTAACATTGTCGTGATCGGACACG
TCGATTCCGGTAAGTCGACCACCACCGGACACTTGATCTACAAGTGCGGT
GGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGAGGCCCAGGAGAT
GGGAAAGGGATCCTTCAAGTACGCCTGGGTTTTGGATAAGTTGAAGGCTG
AGCGCGAGCGTGGTATCACCATCGATATCGCCCTGTGGAAGTTCGAAACT
GCCAAGTACTACGTGACCATCATTGATGCCCCCGGACACAGGGATTTCAT
CAAGAACATGATCACTGGTACCTCGCAGGCCGATTGCGCCGTGCTGATTG
TCGCCGCCGGAACCGGAGAATTCGAGGCAGGTATCTCGAAGAACGGCCAG
ACCCGCGAGCACGCCCTGCTCGCCTTCACCCTGGGTGTGAAGCAGCTGAT
CGTTGGTGTGAACAAGATGGACTCCTCCGAGCCACCATACAGCGAGGCCC
GTTATGAGGAAATCAAGAAGGAAGTGTCCTCTTACATCAAGAAGATCGGC
TACAACCCAGCCGCCGTTGCCTTCGTGCCCATTTCCGGATGGCACGGCGA
CAACATGTTGGAACCCTCTACCAACATGCCCTGGTTCAAGGGATGGAAGG
TGGAGCGCAAGGAGGGTAACGCTGACGGCAAGACCCTGATCGATGCCCTC
GATGCCATCCTTCCCCCAGCCCGTCCCACCGACAAGGCCCTGCGTCTGCC
CCTGCAGGATGTGTACAAAATTGGCGGTATTGGAACAGTACCCGTGGGTC
GTGTGGAGACTGGTGTGCTGAAGCCCGGTACCGTTGTGGTCTTCGCCCCT
GCTAACATCACCACTGAGGTCAAGTCCGTGGAGATGCACCACGAGGCCCT
GCAGGAGGCCGTTCCCGGAGACACGTTGGCTTCAACGTCAGACGTGTCCG
TGAGGAGCTGCGTCGTGCTACGTTGCCGGTGACTCCAGGCTAACCCCCAG
TGAGCCGCGACTTCACCGCCCAGGTCATCGTGCTGACACCCGGTCAATGC
ACGCTAACCCCGTGTTGGATTGCCAACCGCTCATGCTGCAGTTCGCTGAA
AATCAGGAAAGTCAACGTCGTTCGGCAGACACCGAGGAAAACCCAAGTTC
ATCCAGCTTGGGAAAGTCGT
UFO01269.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:15:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ef1alpha48D-RC | 2278 | CG8280-RC | 89..1272 | 53..1203 | 5050 | 96.7 | Plus |
| Ef1alpha48D-RE | 2076 | CG8280-RE | 129..1312 | 53..1203 | 5050 | 96.7 | Plus |
| Ef1alpha48D-RD | 1979 | CG8280-RD | 32..1215 | 53..1203 | 5050 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:15:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11893573..11894616 | 53..1086 | 4795 | 98.9 | Plus |
| 3R | 32079331 | 3R | 31740347..31741172 | 55..880 | 2270 | 85 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:15:25 has no hits.
UFO01269.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:37 Download gff for
UFO01269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1alpha48D-RA | 71..1174 | 42..1125 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:24:44 Download gff for
UFO01269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1alpha48D-RB | 94..1197 | 42..1125 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:26 Download gff for
UFO01269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1alpha48D-RD | 21..1124 | 42..1125 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:26 Download gff for
UFO01269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11893561..11894665 | 40..1125 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:37 Download gff for
UFO01269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7781066..7782170 | 40..1125 | 97 | == | Plus |
