UFO01270.5prime Sequence
1204 bp (1052 high quality bases) assembled on 2008-07-17
> UFO01270.5prime
TGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGA
CATGTCGGAGGCAGGGCGTTTTAGTTACGTCACCTTTGTCGATTCCGCTC
CCATGGTGCTCAAGGAGACCAACATCAACAAGATGCACACTCCATCCGAG
GGCATGTTGCACATCAATCCCAAGGATTTTGTCAACTTCAATTCCAAGAA
TGCGGAAGCCACGATGACCATCAAGTCTATTGCCACCTCGGCAGTGACGT
ACAAGATCCAAACCACATCGCCGGAGAAGTTCCGTGTGCGACCACGTTGC
GGCATCATCCAGCCCAATCAGGAGGCCACCATCAACATATGGTTGAAGTC
GGAGCACAAGCTTAGTGACGACAGCAAGGATAAGTTCCTGGTGATGGCTA
TGGTCGCGCCAGGCGGTGAATGCGGTGGCGCCGATGTGACCGAGCTGTGG
CGGAGCAAATCCCCCACATCTGCGGATGTGGAGCAGCATCGACTGGTCTG
CCGCTTCGATGAGAACAAATCAAAAGCGCAGCTAGATTGCGCAAGCAAGT
CCAGTAAGGCCAGCGTGGATTGCAGCAAGAAGTCCGGTGCTGGCGTAGAT
CCAGCTACGGCAATGGAGCGTCAGTTGGCATTCACCCAGAACCTGCAATA
CGTGACGCTGGCGCTGTTGTTCCTGTTGTTTGCCGGCTTCGGCTTTCTGA
TGTACCAGCAGCTCGGCCAGCACGCCGCTACCTGTCCCAAGGCAACGGCG
TATTCGTGCGCTAAGCGCAAAGCAAGCTTTCTAGACCATTCGTTTGGCGC
GCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATC
ACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCA
ATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAG
TTCTGAGGTCATTACTGGATCTATCAACAGGAGTCAAGCGAGCTCGATAT
CAAATTACGCCCCGCCTGCCACTCATCGCAGTACTGTGTATCCGTAGCAT
TCTGCGACATGCAGCATCACAAACGCATGATGACCTGAATCGCAGCGCAT
CAGCACTGTCGCCTTGCTATATATTTGCCATGTGAACGGGCGCAGATTGC
CAATTGCAGTTATCCACCTGGTAAACTTACCAGGAATGTGCTGCTTGAAA
CCCA
UFO01270.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vap-33B-RC | 1656 | CG33523-RC | 100..819 | 52..771 | 3600 | 100 | Plus |
Vap-33B-RE | 2672 | CG33523-RE | 1143..1835 | 79..771 | 3465 | 100 | Plus |
Vap-33B-RF | 2574 | CG33523-RF | 1045..1737 | 79..771 | 3465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5928702..5929040 | 254..592 | 1695 | 100 | Plus |
3L | 28110227 | 3L | 5929104..5929283 | 592..771 | 900 | 100 | Plus |
3L | 28110227 | 3L | 5928536..5928640 | 151..255 | 525 | 100 | Plus |
3L | 28110227 | 3L | 5928224..5928297 | 79..152 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:24:44 has no hits.
UFO01270.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:56 Download gff for
UFO01270.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33523-RC | 100..827 | 52..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:30:29 Download gff for
UFO01270.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33523-RC | 100..827 | 52..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:11 Download gff for
UFO01270.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vap-33B-RC | 100..827 | 52..780 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:11 Download gff for
UFO01270.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5927881..5927907 | 52..78 | 100 | -> | Plus |
3L | 5928224..5928296 | 79..151 | 100 | -> | Plus |
3L | 5928537..5928640 | 152..255 | 100 | -> | Plus |
3L | 5928704..5929039 | 256..591 | 100 | -> | Plus |
3L | 5929104..5929291 | 592..780 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:56 Download gff for
UFO01270.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5921637..5921740 | 152..255 | 100 | -> | Plus |
arm_3L | 5920981..5921007 | 52..78 | 100 | -> | Plus |
arm_3L | 5921324..5921396 | 79..151 | 100 | -> | Plus |
arm_3L | 5921804..5922139 | 256..591 | 100 | -> | Plus |
arm_3L | 5922204..5922391 | 592..780 | 97 | == | Plus |