Clone UFO01270 Report

Search the DGRC for UFO01270

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:12
Well:70
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG33523-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO01270.5prime Sequence

1204 bp (1052 high quality bases) assembled on 2008-07-17

> UFO01270.5prime
TGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGA
CATGTCGGAGGCAGGGCGTTTTAGTTACGTCACCTTTGTCGATTCCGCTC
CCATGGTGCTCAAGGAGACCAACATCAACAAGATGCACACTCCATCCGAG
GGCATGTTGCACATCAATCCCAAGGATTTTGTCAACTTCAATTCCAAGAA
TGCGGAAGCCACGATGACCATCAAGTCTATTGCCACCTCGGCAGTGACGT
ACAAGATCCAAACCACATCGCCGGAGAAGTTCCGTGTGCGACCACGTTGC
GGCATCATCCAGCCCAATCAGGAGGCCACCATCAACATATGGTTGAAGTC
GGAGCACAAGCTTAGTGACGACAGCAAGGATAAGTTCCTGGTGATGGCTA
TGGTCGCGCCAGGCGGTGAATGCGGTGGCGCCGATGTGACCGAGCTGTGG
CGGAGCAAATCCCCCACATCTGCGGATGTGGAGCAGCATCGACTGGTCTG
CCGCTTCGATGAGAACAAATCAAAAGCGCAGCTAGATTGCGCAAGCAAGT
CCAGTAAGGCCAGCGTGGATTGCAGCAAGAAGTCCGGTGCTGGCGTAGAT
CCAGCTACGGCAATGGAGCGTCAGTTGGCATTCACCCAGAACCTGCAATA
CGTGACGCTGGCGCTGTTGTTCCTGTTGTTTGCCGGCTTCGGCTTTCTGA
TGTACCAGCAGCTCGGCCAGCACGCCGCTACCTGTCCCAAGGCAACGGCG
TATTCGTGCGCTAAGCGCAAAGCAAGCTTTCTAGACCATTCGTTTGGCGC
GCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATC
ACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCA
ATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAG
TTCTGAGGTCATTACTGGATCTATCAACAGGAGTCAAGCGAGCTCGATAT
CAAATTACGCCCCGCCTGCCACTCATCGCAGTACTGTGTATCCGTAGCAT
TCTGCGACATGCAGCATCACAAACGCATGATGACCTGAATCGCAGCGCAT
CAGCACTGTCGCCTTGCTATATATTTGCCATGTGAACGGGCGCAGATTGC
CAATTGCAGTTATCCACCTGGTAAACTTACCAGGAATGTGCTGCTTGAAA
CCCA

UFO01270.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:45
Subject Length Description Subject Range Query Range Score Percent Strand
Vap-33B-RC 1656 CG33523-RC 100..819 52..771 3600 100 Plus
Vap-33B-RE 2672 CG33523-RE 1143..1835 79..771 3465 100 Plus
Vap-33B-RF 2574 CG33523-RF 1045..1737 79..771 3465 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5928702..5929040 254..592 1695 100 Plus
3L 28110227 3L 5929104..5929283 592..771 900 100 Plus
3L 28110227 3L 5928536..5928640 151..255 525 100 Plus
3L 28110227 3L 5928224..5928297 79..152 370 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:24:44 has no hits.

UFO01270.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:56 Download gff for UFO01270.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33523-RC 100..827 52..780 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:30:29 Download gff for UFO01270.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33523-RC 100..827 52..780 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:11 Download gff for UFO01270.5prime
Subject Subject Range Query Range Percent Splice Strand
Vap-33B-RC 100..827 52..780 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:11 Download gff for UFO01270.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5927881..5927907 52..78 100 -> Plus
3L 5928224..5928296 79..151 100 -> Plus
3L 5928537..5928640 152..255 100 -> Plus
3L 5928704..5929039 256..591 100 -> Plus
3L 5929104..5929291 592..780 97 == Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:56 Download gff for UFO01270.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5921637..5921740 152..255 100 -> Plus
arm_3L 5920981..5921007 52..78 100 -> Plus
arm_3L 5921324..5921396 79..151 100 -> Plus
arm_3L 5921804..5922139 256..591 100 -> Plus
arm_3L 5922204..5922391 592..780 97 == Plus