UFO01271.5prime Sequence
1225 bp (1002 high quality bases) assembled on 2008-07-17
> UFO01271.5prime
GATCTGCGGCCGCATAACAACGTATAGCATACATTATACGAAGTTATCAG
TCGACATGGGCCAGACTTCCAGTCACCGGCAGATGCACCACAGTAGCAAT
AACAACAACAAGGAGGAACCACCACAACCGGCTTCACAGTTTGGAAATCG
TCGAACCTCTACCCGCAAATCGACTTCGTCTTCGAAACATTACCCCACAT
TGGTGCAACCATTGCGTAAGGATGAGCTCTCTCTCCTGCGAGATTCACTT
CTGCGCAATGGAAGCATTATGCGCAAGAACCCGGAACGTCGTCCGGTAAC
GATCAGTGAGCTGAAACCAGTTAATACCGGGCAGGGGACTTCGGGTAGTG
TCCTGCCTATTACAGCAGAGGATGCTGCTGGTGGGAGCAGTAGTAGCATC
ACCCAACTAATGGCCTTCCAACTGCCCGTGGATCGAAGTGCCAAGACTGA
CGACCTGGCTGCCGAATCCTCGGCTTCAGCAGCAGCAGCTGTGGCGCCCA
AGGAGGGGCGCAATGAGTTTTATATTGTGGGAGATGGCTATCATCGGACG
GATCACTGCTACTATCGCAGTCCCAATGGCGATTTTCACAAACTGCCATC
CGACTCCTTTCACAAGATGTCGGAGGGCTGTTTCGTCCGAATGGCCGATG
GGGTCTTCCGTCGCCTGGAGGTACCCACCAAGGCTCAAATATCCCGAAGA
TCCAGCAGGGCAGAGGAAATAGGCGATGCCACAAGCCAGGGAAATGGAAG
TGCCGCCACCAATGTTAAGAGCCAACTGATGAGATTTCTAAAGCGCTCCA
AGAGCCACACGCCCGCCACTATTGCCAAGTTGCAGCGGGAAAAGGAGGAG
GCCCGAGCGGAACGCAAGCAACGGCTATCGAACGCCCTGCGGCAAAGAAT
CTAGCGGCCACAAATGCAGCCTCAGCTGCGGCGACGACTCATCCTACGCA
AGCGGTGTGTGGTGGCACCGTAAGCAGTCAGATCAATAAGATTGTGGGTG
ACAATATATCGAAACCGCGCTCGCGATGTGCCACCAGTAAGCGAAAGCCC
AAGGCAAGAGTCGCATCATCAGGTGACAAGCTCGCAACTCGAGGATTTTT
GTAACCCCAATGCAAGCTTTCTAAAAACATCGTTGGCGCGCGGCCCAAGT
GACTGCTAATCTAATCAATCCTAACTCTAATCAACTAGCCTAGGGAATCC
TGTCCAGTGAACATATGGCCTTTGT
UFO01271.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| par-1-RQ | 3321 | CG8201-RQ | 610..1678 | 55..1109 | 4755 | 97.4 | Plus |
| par-1-RH | 4868 | CG8201-RH | 474..1527 | 55..1094 | 4695 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19464641..19465587 | 55..997 | 4510 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:55:25 has no hits.
UFO01271.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:13 Download gff for
UFO01271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| par-1-RQ | 603..1685 | 48..1115 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:16:07 Download gff for
UFO01271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| par-1-RQ | 569..1651 | 48..1115 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:44:17 Download gff for
UFO01271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| par-1-RQ | 603..1685 | 48..1115 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:44:17 Download gff for
UFO01271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19464634..19465702 | 48..1104 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:13 Download gff for
UFO01271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15352139..15353207 | 48..1104 | 96 | | Plus |
