UFO01272.5prime Sequence
1219 bp (301 high quality bases) assembled on 2008-07-17
> UFO01272.5prime
GATCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAA
TCCACATGTCTCGGCATTTGGAAAACTTCTTTACCAACAGAGTACGGCGA
CTACTGCAAGGGGTTGAACAAATGACCACCGCCGCCTCCCCATCGCAGCT
TGCCACATCGTCCTCCACAATGATGGCGGGCTCTGGATCCTTGGCGACCT
CGGCGTCCGCCGCTGCCCCCACAACCACGCCCAGCATTTCGGCCGTTCGC
GCCCTGGCCATGGAGTACAAGTCGCTGCAGGAAGAGCCGGTGGAGGGATT
CCGCGTCTAGCTGATCAACGATTACAATCTGTTCGAATGGGAGGTGGCAA
TCTTCGGGCCACCGGACACCCTCTACCAGGGCGGCTACTTCAAGGCGCAC
ATGAAGTTCCCGCACGACTATCCATACTCACCGCCTTCCATACTCTTCCG
GACTAAGGTCTGGCTTCCAAATGTTTACGAAAACGGTGATCTGTGCATAT
CCATACTACATCCGCCGGTGGATGATCCGCAGAGTGGCGAGCTGCCCTGC
GAACGCTGGAATCCCACGCACAATGTGCGCACCATACTGCTGTCGGTCAT
ATCGCTGCTCAATGAGCCGAACACATTCTCGCCGGCCAACGTAGACGCCT
CAGTCATGTACCGCCGATGGCGGGACTCACAGGGTAAGGACGATGAGTAT
CCGAACATCAGACTAATACGCGCTCTGGCCGCCAATGCCGAGGCCTGCCG
GGAGGGCATTGAGGTTCCGATGACCCTGGAGGACTACTGCCTGATGCCCA
CGCGATAGCCCACAACGGAGTCTGGTCTGTATGCCTTTTCTAGCATGATG
ATTTCTATCTGGAGACGGAGGATGATCTGCCATCTGATGATGACTTCTAT
GAGGAGTACACGATGATGAGGACGAGGATGAGGATGAAGACAGTGCCACG
GCGCCGATTATCAAAAATAATGGAAGTAGCATCACTGCAATAACATCGGG
GTGTCGTGAAAGGCCGCCCGCGTCTTATCGTACCATGCTCAATCCGCTGA
TGACTGGCGCCAGGGTGCAGACCACGGCGAGCTTTCTAGACCAGTAGCTT
GCACGCGGCCAGTAACTGACTGTATCTAAATCTATCATAATATAATCCAA
CTAGCTAGGAAGTCTGTTCATGAACTATGCTAGCATTCTTCACACATTGA
TGTCCCTGGCGGCGTCAAC
UFO01272.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7656-RD | 1410 | CG7656-RD | 235..1258 | 54..1075 | 3840 | 92 | Plus |
| CG7656-RF | 2027 | CG7656-RF | 235..1252 | 54..1075 | 3740 | 91.4 | Plus |
| CG7656-RE | 1234 | CG7656-RE | 118..1108 | 87..1075 | 3660 | 91.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15587004..15587633 | 683..54 | 2805 | 96.3 | Minus |
| 3L | 28110227 | 3L | 15586226..15586603 | 1054..680 | 975 | 85.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:24:11 has no hits.
UFO01272.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:26 Download gff for
UFO01272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7656-RD | 229..1250 | 46..1068 | 91 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:20:18 Download gff for
UFO01272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7656-RC | 27..1048 | 46..1068 | 91 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:47 Download gff for
UFO01272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7656-RD | 229..1250 | 46..1068 | 91 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:47 Download gff for
UFO01272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15587005..15587638 | 45..682 | 95 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:26 Download gff for
UFO01272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15580105..15580738 | 45..682 | 95 | <- | Minus |
