UFO01273.5prime Sequence
1202 bp (1050 high quality bases) assembled on 2008-07-17
> UFO01273.5prime
GATCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAG
TCGACATGGCGACGAGGAATCTGTTGGCCATCCTTCTTTTGGCCAGCATC
TGCATGACCCAGGCATATCCGGCTTTGTTGCCCTACATCTACAATCCTTC
CAAGCGCAGCGGTGATACGGCTTTCCCCCAAATCGAGGACGATGTAAGTG
AACTGGACCAGCTGCGGAATGAACCGGGAGCGGTGATGGCCAAGCGTCAG
CACGATGGAAGTACAGCCCGCACCACCACTACCACCAAGGAGAGTGTCGA
GGAGGTCGCCGCTGTTCCCGAGCCAGGTGCACAACCAAATGCGAATATTA
TGCCCGACTTGGAGAGGCAGTTGGAGGTGGCGACGCCTCTGATTTCCACC
ACTACAACCACTAGCACGTCGGCCACCACCACTACGGCGACGTCCAAGGA
GGAGGGCGAAAGGTCCCAGCTGGAGGAGCCGAAGACGCAGATCAAAACCG
TAGTGGAGCCGACGGCCCATGCGAAGAACGCCAAAAGCTTCTTGCGTAGT
CCGAATGGTCAGTACTCTTCGTTCGACATGGCCCAGTATATTTTTTGGAC
TGGAGATGAAACAGCTGTGGTAAAAGCCGTGGAAGAACTGGTTGAGGGGA
AAGTGATCACTCGGGAGAGCGCCCTGAAGTTCCTGCAGGACATTCGGCTG
GGAATAGAGTTCTTGCAGCGGTCCTATGCCAATCGAATTTTCCCCGAAGA
GGTTCGCCAGAATCAGTTAAAGCGCCACAGTCCCGCCATTACCACGCCCC
CAGCATCCACTACGACCACGACGACAACAAGCACCACCACAACCACAGAA
AAGCCATTCCCAGCAGTGCACGAATCCGGTTCGGAATCAGGAATCGAGCG
AGGCGCCGCAGGAGTCCTGCCCGCGAAGAGCTTCGATAGCTTCACCTTCT
GGAACAAACTCAAAGTTTTGGACAGCGAGGCACAGCAGGATTTGGATGAC
TATGATGGAGGGTCGGGCCAAGATGTCGAGTACTGGTACATGAATACTCC
CTGGAGGAGATCTTTACAACTGGCAAAGGTATGTTGCTCATCGCTTTCGC
ATGGCTTCGAATGGAGCGAATGGACTGCGAAGCTACGGACTCGAAGGCGG
AGGCTAACGTGGGGGTCCTAACATCGAACGTGCCAGAGAAAGCGTCTAAG
AG
UFO01273.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9813-RC | 2174 | CG9813-RC | 106..1167 | 55..1110 | 5055 | 98.9 | Plus |
| CG9813-RF | 2179 | CG9813-RF | 111..1172 | 55..1110 | 5055 | 98.9 | Plus |
| CG9813-RG | 2603 | CG9813-RG | 1004..1596 | 524..1110 | 2710 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13378402..13378784 | 526..144 | 1915 | 100 | Minus |
| 3R | 32079331 | 3R | 13374449..13374781 | 987..655 | 1665 | 100 | Minus |
| 3R | 32079331 | 3R | 13377533..13377663 | 655..525 | 655 | 100 | Minus |
| 3R | 32079331 | 3R | 13379003..13379091 | 143..55 | 445 | 100 | Minus |
| 3R | 32079331 | 3R | 13374275..13374371 | 1082..989 | 210 | 92.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:38:05 has no hits.
UFO01273.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:45 Download gff for
UFO01273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9813-RF | 108..1176 | 48..1116 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:16:12 Download gff for
UFO01273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9813-RA | 150..624 | 48..526 | 99 | -> | Plus |
| CG9813-RA | 1021..1614 | 527..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:00 Download gff for
UFO01273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9813-RF | 108..1176 | 48..1116 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:00 Download gff for
UFO01273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13374279..13374370 | 990..1078 | 92 | <- | Minus |
| 3R | 13374447..13374780 | 656..989 | 99 | <- | Minus |
| 3R | 13377533..13377661 | 527..655 | 100 | <- | Minus |
| 3R | 13378402..13378784 | 144..526 | 100 | <- | Minus |
| 3R | 13379003..13379094 | 48..143 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:45 Download gff for
UFO01273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9200001..9200092 | 990..1078 | 92 | <- | Minus |
| arm_3R | 9200169..9200502 | 656..989 | 99 | <- | Minus |
| arm_3R | 9203255..9203383 | 527..655 | 100 | <- | Minus |
| arm_3R | 9204124..9204506 | 144..526 | 100 | <- | Minus |
| arm_3R | 9204725..9204816 | 48..143 | 95 | | Minus |
