UFO01274.5prime Sequence
1192 bp (1040 high quality bases) assembled on 2008-07-17
> UFO01274.5prime
GATCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAG
TCGACATGTCCGCCGAAGTGGAGGAACTATTGAAGCGCTTTCAGTCCATG
AAGAACGTCACCGGCATAGTTGTGGTGGACAACGACGGCATTCCGATCAA
AACGACCCTGGACTACACTCTGACACTCCACTACGCGGCACTGATGCAAA
CGGTGCGGGAGAAGGCTCGCCAGGTGGTCCTGGATCTGGACGCCACCAAC
GAATTCACCTTCCTGCGGCTGCGGACTGAGCAGAATGAGGTGATGCTGTG
CCCGCAGGAAGATTACTTCATCATGGTGATCCAGAGCCCGTGCGACGCAA
GCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAAT
CATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTC
ATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGA
GCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATC
AACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACT
CATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCA
TCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTC
GCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGT
CCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTG
GCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAG
GTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCC
GGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGGTTTG
CTCATGGAAAACGGTGTAACAAGGTGAACACTATCCCATATCACAGCTCA
CGTCTTTCATGCATACGACTCGATGACATCATCAGGCGGCAAGAATGTGA
TAAGCGATAAACTGTGCTATTTTCTACGTCTAAAAGCGTAATATCAGCTG
ACGGTCTGTTATAGTTACATGGAGACACTGACTGATGCTCAGTTTCCTAC
GATGCCATTGGATATATCCACCGGGTGTATATTCCAAGTGTA
UFO01274.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| robl22E-RB | 454 | CG10838-RB | 56..346 | 56..346 | 1455 | 100 | Plus |
| robl22E-RA | 475 | CG10838-RA | 77..367 | 56..346 | 1455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2290332..2290622 | 346..56 | 1455 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:03:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..289 | 915..973 | 130 | 71.2 | Plus |
UFO01274.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:01:00 Download gff for
UFO01274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| robl22E-RA | 74..373 | 49..352 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:24:46 Download gff for
UFO01274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| robl22E-RA | 1..294 | 56..347 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:08 Download gff for
UFO01274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| robl22E-RA | 74..373 | 49..352 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:08 Download gff for
UFO01274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2290332..2290630 | 46..346 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:01:00 Download gff for
UFO01274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2290332..2290630 | 46..346 | 98 | <- | Minus |
