UFO01279.5prime Sequence
1220 bp (1060 high quality bases) assembled on 2008-07-17
> UFO01279.5prime
CTGCGGCCGCATAACATCGTATAGCATACATTATACGAAGTTATCAGTCG
ACATGGTACAGCAGGGCCTCGATGCGACGAACTTTGGTCTGCGGAGCGAC
TACTCCAGTGAGAACGGCGATCATCCATCGTTGTTCGATACGATTAAGGA
TGGGGATCAGCCGGATATGTGTGCCTTTTGCCTGGATCGCATACAGAATC
CAGAGAAGCTGCACTGCAATCATGCGTTCTGCAAAAGCTGTTTAGCACTG
TACAGGGAAGCTCGCAACTGGGTGGCCAAGCGTTGCCCAATCTGTCGGAG
CAGCCTGGACATGGATGGCCAGGTGTCCAGGCAGTTCCACGATAACTGGC
GTCTATTTGGTATTATGATGGTACCGCTGATGGTGCTCAGTCTGGGCCCC
TTTTATTTGCTGTTGCTTTACTGGGCAAGCTTTCTAGACCATTCGTTTGG
CGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATA
ATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCA
CCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATG
GAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCG
ATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTC
ATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCT
GAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCC
ATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCCACGTTTAAAT
CAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTC
TCAATAAACCCTTTAGGGAAATAGGCCAGGGTTTCACCGTAACACGCCAC
ATCTTGCGAATATATGTGTAGAACTGCCGGAAATCGTCGTGTATTCACTC
CAGAGCGATGAAAACGTTTCAGTTTGCTCATGAAACGGTGTAACAGGGTG
AACACTATCCCATATCACCAGCTCACGTCTTCATGCATACGAAATTCGAT
GACATCATCAGCGGGCAGAATGGTAAATAAGCGATAAACTGGCTTATTTT
CTTACGGCTTGAAGGCGTATATCAGCTGAACGGCTTGTTTAGGGATCATT
GAGCCAACTGGAACTGAAAA
UFO01279.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17048-RB | 712 | CG17048-RB | 167..538 | 53..424 | 1860 | 100 | Plus |
| CG17048-RA | 592 | CG17048-RA | 167..538 | 53..424 | 1860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13354043..13354333 | 343..53 | 1455 | 100 | Minus |
| 2R | 25286936 | 2R | 13353812..13353892 | 424..344 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:56:27 has no hits.
UFO01279.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:56 Download gff for
UFO01279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17048-RA | 185..566 | 45..432 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:27:33 Download gff for
UFO01279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17048-RA | 1..375 | 53..427 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:44:53 Download gff for
UFO01279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17048-RA | 163..544 | 45..432 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:44:53 Download gff for
UFO01279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13353812..13353892 | 344..424 | 100 | <- | Minus |
| 2R | 13354043..13354337 | 45..343 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:56 Download gff for
UFO01279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9241317..9241397 | 344..424 | 100 | <- | Minus |
| arm_2R | 9241548..9241842 | 45..343 | 98 | | Minus |
