UFO01286.5prime Sequence
1190 bp (1056 high quality bases) assembled on 2008-07-17
> UFO01286.5prime
CTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCG
ACATGGAAGACAATAACACGAGCAGCAGTGCGGGCGGTGCGTCCATCAAA
CACGAGGATCCATCGGTGACACTCACAATAAGGCTGATTATGCAAGGAAA
GGAGGTTGGTAGTATTATTGGTAAAAAGGGTGAAATTGTCAACAGATTTC
GTGAAGAGTCTGGTGCCAAAATCAACATTTCGGATGGCTCATGCCCGGAA
CGTATTGTGACTGTGTCTGGTACAACTAATGCAATCTTTTCGGCATTCAC
GCTCATTACAAAGAAGTTCGAAGAGTGGTGCTCGCAGTTCAATGATGTAG
GCAAAGTTGGTAAAACTCAAATACCCATTCGATTGATTGTGCCCGCCAGT
CAATGTGGATCGTTAATTGGCAAGAGTGGTTCAAAGATCAAGGAAATTCG
TCAGACCACGGGCTGCTCCATCCAAGTGGCCAGTGAAATGCTACCCAATT
CCACAGAGCGGGCGGTTACCTTGAGCGGCAGCGCCGAGCAGATCACCCAG
TGCATCTATCAGATATGTCTTGTCATGTTGGAGTCCCCGCCACGCGGTGC
CACCATCCCGTACCGACCAAAACCACAGGTTACTGGCCCCGTCATCCTGG
CCAATGGACAGGCTTTCACCATCCAAGGAAACTACGCGGTGCCCACACAA
GAGGTGGCCAAGAACCCGCTGGCCAGTCTGGCCGCCTTGGGCCTGGCTGG
GATGAATCCGGCCAGCACTGGGGGCATCAACCACACAGCAGCCTTGGCTG
CACTGGCCGGGTCGCAACTGCGTACAGCGAATCCCGCGAACCGAGCCCAG
CAGCAGCAGCACGAGATGACCGTCTCAAACGACCTGATTGGCTGCATCAT
CGGCAAGGGTGGCACCAAGATCGCCGAGATTCGCCAAATATCCGGCGCCA
TGATCCGGATCTCCAACTGCGAGGAGCGCGAGGGCGGCATACGACCGCAC
CATCACATCAGCGGCATCCGGACTCGGTGTCCTGCCCAATACTTAATTAA
TATGAGAATATCATGAAGACTGCTGTCTGCCATACTATATCACTACATGC
GCCCAGTGCAATGGTAAAATCATCAGGCAGCCTTTCCAGACATCGTTAGC
GCGGCTCTAGTAAGTGCAATCAACCGAGCGAATCTAATCG
UFO01286.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mub-RC | 9374 | CG7437-RC | 841..1921 | 52..1119 | 5015 | 98.3 | Plus |
| mub-RD | 11975 | CG7437-RD | 841..1851 | 52..1056 | 4890 | 99.3 | Plus |
| mub-RL | 2968 | CG7437-RL | 900..1992 | 52..1119 | 4885 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21921051..21921327 | 786..1056 | 1095 | 96.4 | Plus |
| 3L | 28110227 | 3L | 21915260..21915424 | 419..583 | 825 | 100 | Plus |
| 3L | 28110227 | 3L | 21915534..21915657 | 582..705 | 620 | 100 | Plus |
| 3L | 28110227 | 3L | 21914891..21915009 | 207..325 | 595 | 100 | Plus |
| 3L | 28110227 | 3L | 21907821..21907921 | 52..152 | 505 | 100 | Plus |
| 3L | 28110227 | 3L | 21915100..21915200 | 324..424 | 490 | 99 | Plus |
| 3L | 28110227 | 3L | 21920901..21920987 | 702..788 | 435 | 100 | Plus |
| 3L | 28110227 | 3L | 21914774..21914832 | 150..208 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:37:59 has no hits.
UFO01286.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:43 Download gff for
UFO01286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mub-RC | 841..1924 | 52..1122 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:14:59 Download gff for
UFO01286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mub-RC | 808..1891 | 52..1122 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:58 Download gff for
UFO01286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mub-RC | 841..1924 | 52..1122 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:58 Download gff for
UFO01286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21915536..21915655 | 584..703 | 100 | -> | Plus |
| 3L | 21920903..21920987 | 704..788 | 100 | -> | Plus |
| 3L | 21921054..21921327 | 789..1056 | 97 | -> | Plus |
| 3L | 21907821..21907920 | 52..151 | 100 | -> | Plus |
| 3L | 21914776..21914832 | 152..208 | 100 | -> | Plus |
| 3L | 21914893..21915009 | 209..325 | 100 | -> | Plus |
| 3L | 21915102..21915195 | 326..419 | 100 | -> | Plus |
| 3L | 21915261..21915424 | 420..583 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:43 Download gff for
UFO01286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21900921..21901020 | 52..151 | 100 | -> | Plus |
| arm_3L | 21907876..21907932 | 152..208 | 100 | -> | Plus |
| arm_3L | 21907993..21908109 | 209..325 | 100 | -> | Plus |
| arm_3L | 21908202..21908295 | 326..419 | 100 | -> | Plus |
| arm_3L | 21908361..21908524 | 420..583 | 100 | -> | Plus |
| arm_3L | 21908636..21908755 | 584..703 | 100 | -> | Plus |
| arm_3L | 21914003..21914087 | 704..788 | 100 | -> | Plus |
| arm_3L | 21914154..21914427 | 789..1056 | 97 | -> | Plus |
