UFO01287.5prime Sequence
1214 bp (1055 high quality bases) assembled on 2008-07-17
> UFO01287.5prime
TCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTC
GACATGGAGAACAACGAAGCCCCCTCCCCCTCGGGATCCAACAACAACGA
GAACAACAATGCAGCCCAGAAGAAGCTGCAGCAGACCCAAGCCAAGGTGG
ACGAGGTGGTCGGGATTATGCGTGTGAACGTGGAGAAGGTCCTGGAGCGG
GACCAGAAGCTATCGGAACTGGGCGAGCGTGCGGATCAGCTGGAGCAGGG
AGCATCCCAGTTCGAGCAGCAGGCCGGCAAGCTGAAGCGCAAGCAATGGT
GGGCCAACATGAAGATGATGATCATCCTGGGCGTGATAGCCGTTGTGCTG
CTCATCATCGTTCTGGTGTCCGTTTGGCCGTCTAGTAGTGACAGCGGCAG
TGGTGGAGGAAACAAGGCCATCACCCAAGCACCGCCGCACGCAAGCTTTC
TAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAAT
CATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACT
AGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTC
TGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGG
AGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGC
AGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAA
ACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTG
CGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATAT
TGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAG
ACGAAAAACATATTCTCATAAACCCTTTAGGGAAATAGGCCAGGTTTTCA
CCGTAACACGCCACATCTTGCGATATATGTGTAGAAACTGCCGGAAATCG
TGGGGTATCACTCCAGAGCGATGAAAACGTTTCAGTTGCTCATGGAAAAC
GGTGTACAGGGTGAACACTATCCCATATCACAGCTCACGTTCTTTCATGC
ATACGAAATTCGATGAACATTCATCAGGCGGCAGGATTGGAATAAGGCCG
ATAAACCTGGCTATTTCTACGTCTTTAAGGCCGTATATTCAGACCTTGTA
AACGGCGCCCTGGA
UFO01287.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syb-RE | 814 | CG12210-RE | 109..495 | 54..440 | 1920 | 99.7 | Plus |
| Syb-RA | 852 | CG12210-RA | 147..533 | 54..440 | 1920 | 99.7 | Plus |
| Syb-RC | 921 | CG12210-RC | 263..602 | 101..440 | 1685 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10250879..10251144 | 366..101 | 1315 | 99.6 | Minus |
| 2R | 25286936 | 2R | 10249754..10249828 | 440..366 | 375 | 100 | Minus |
| 3L | 28110227 | 3L | 1635328..1635439 | 287..176 | 245 | 81.2 | Minus |
| 2R | 25286936 | 2R | 10251927..10251974 | 101..54 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:20:52 has no hits.
UFO01287.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:03 Download gff for
UFO01287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syb-RA | 142..538 | 49..445 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:16:14 Download gff for
UFO01287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syb-RC | 255..599 | 101..445 | 99 | | Plus |
| Syb-RC | 134..185 | 49..100 | 96 | -> | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:50 Download gff for
UFO01287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syb-RA | 142..538 | 49..445 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:50 Download gff for
UFO01287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10249754..10249827 | 367..440 | 100 | <- | Minus |
| 2R | 10250879..10251144 | 101..366 | 99 | <- | Minus |
| 2R | 10251928..10251979 | 49..100 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:03 Download gff for
UFO01287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6137259..6137332 | 367..440 | 100 | <- | Minus |
| arm_2R | 6138384..6138649 | 101..366 | 99 | <- | Minus |
| arm_2R | 6139433..6139484 | 49..100 | 96 | | Minus |
