UFO01288.5prime Sequence
1215 bp (1072 high quality bases) assembled on 2008-07-17
> UFO01288.5prime
TCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTC
GACATGGCGTGCCTTAACACCCTGAAGCAGGAAATCAAAACGCTAGAGAA
GATCTTCCCGAAGAACCACGAGCGCTTTCAGATCCTCAATTCCAGCGTCG
ACGAACTGCTCTGCCGTTTTATCGATAAGAATGGAAAGCGGTACGATATT
CACGCCAACATAACGGAAACGTATCCCTCATCGCCGCCAGTTTGGTTCGC
CGAAAGCGAGGAGACGAGCGTCACAAATGCTGTTCAAATACTTAGCAATA
CGAATGGACGTGATAATCACGTGATCAATCAGGTGGGCATACTGCTGCGT
GAGCTGTGCCGCCTTCACAACGTTCCACTGCCACCCGACATCGATAATTT
GGCTCTGCCGCTGCAAACGCCGCCGCCATCCGCTTCCCCCCTTCGCTGCG
AGCAGAGACCAGGTGGTGGTGGAGCGGGGGGCGGTGGCGGACCCCACGGC
AACGAGGAGACCGATTCGGATCAGGAGGAGATCGAGGATCCCATCGGCGA
GAGCGAACAGGAGAGCGAGGGCGATGAGGACTTGCCGCTGGAAATGGATG
ATGTACGCAGTACAAGCAAGAAGGACGACATGGAAGTGGAACACCTAGCG
ACTCTAGAAAAACTGCGTCAAAGTCAGAGACAAGACTATCTAAAAGGTTC
CGTTTCGGGTTCCGTGCAGGCAACCGATCGCTTAATGAAGGAATTACGCG
ACATTTATCGCTCAGACGCCTTCAAAAAGAACATGTATTCTATTGAGCTC
GTCAATGAGTCGATTTACGAATGGAACATTCGCCTCAAGTCTGTCGACCC
GGACAGTCCGCTGCACAGTGATCTGCAAATGCTCAAGGAGAAGGAGGGCA
AGGACAGCATACTGCTCAACATCCTGTTCAAGGAGACGTATCCCTTCGAG
CCGCCATTTGTGCGCGTTGTCCATCCGATTATCTCAGGCGGCTATGTGCT
CATCGGTGGTGCCATCTGCATGGATTGCTGACCAACAGGCTGAGCTCGCA
TATACCGGTGAAGCGTATCATGCAATGCAGCCACTTCTCGTCAAGGGAAA
GGCCGCATCATCGGGCTACCAAGCACTGAACCAGCAATAAGGTTGCTCGG
CCAGCAGCTCAGTCTGTGCAATCCGAAGAATGATGTCCCCGGCTCAGGAA
AAATGCCAGCCTTCT
UFO01288.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2924-RD | 2606 | CG2924-RD | 619..1713 | 54..1134 | 5065 | 98.3 | Plus |
| CG2924-RB | 2717 | CG2924-RB | 730..1824 | 54..1134 | 5065 | 98.3 | Plus |
| CG2924-RE | 2928 | CG2924-RE | 669..1763 | 54..1134 | 5065 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2266247..2266539 | 988..696 | 1465 | 100 | Minus |
| X | 23542271 | X | 2266820..2267110 | 620..330 | 1455 | 100 | Minus |
| X | 23542271 | X | 2268937..2269099 | 216..54 | 815 | 100 | Minus |
| X | 23542271 | X | 2267174..2267294 | 335..215 | 605 | 100 | Minus |
| X | 23542271 | X | 2266596..2266673 | 696..619 | 390 | 100 | Minus |
| X | 23542271 | X | 2266136..2266186 | 1035..986 | 205 | 98 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:15:27 has no hits.
UFO01288.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:05 Download gff for
UFO01288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2924-RA | 663..1750 | 46..1122 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:24:41 Download gff for
UFO01288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2924-RC | 608..1695 | 46..1122 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:21 Download gff for
UFO01288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2924-RE | 663..1750 | 46..1122 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:21 Download gff for
UFO01288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2268938..2269105 | 46..215 | 97 | | Minus |
| X | 2266820..2267107 | 333..620 | 100 | <- | Minus |
| X | 2267177..2267293 | 216..332 | 100 | <- | Minus |
| X | 2266248..2266539 | 696..987 | 100 | <- | Minus |
| X | 2266597..2266671 | 621..695 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:05 Download gff for
UFO01288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2160281..2160572 | 696..987 | 100 | <- | Minus |
| arm_X | 2160630..2160704 | 621..695 | 100 | <- | Minus |
| arm_X | 2160853..2161140 | 333..620 | 100 | <- | Minus |
| arm_X | 2161210..2161326 | 216..332 | 100 | <- | Minus |
| arm_X | 2162971..2163138 | 46..215 | 97 | | Minus |
