UFO01289.5prime Sequence
1219 bp (1053 high quality bases) assembled on 2008-07-17
> UFO01289.5prime
AGATCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCA
GTCGACATGCCTCATACACACAGCAGGCATGGATCATCAGGAGATGATTT
ATGCAGTACTGATGAAGTGAAGATTTTTAAAGACGAAGGAGATCGCGAGG
ATGAAAAAATATCATCTGAGAACTTATTAGTTGAAGAAAAGTCTAGCTTA
ATAGATTTAACTGAAAGTGAGGAAAAGGGTCACAAAATTTCAAGGCCGGA
CCACAGCCCTGTTTTTAATAAGCTGGACACCCACGCCCCTAGCTTTAACA
TGGGTTACTTAGTTTCTCCTTATTCGTATGCCAATGGTTCTCCAAGTGGC
TTACCGGTAACTATGGCCAACAAAATTGGACTGCCTCCGTTTTTTTGTCA
CAATGCTGATCCGTTATCAACACCACCACCAGCGCATTGCGGAATTCCTC
CATATCAACTGGATCCTAAGATGGGCTTAACTCGACCAGCGCTATACCCA
TTTGCGGGAGGTCAATATCCTTACCCAATGCTAAGTTCAGATATGTCTCA
AGTGGCATCATGGCACACTCCTTCTGTTTATTCTGCATCTAGTTTTAGAA
CTCCTTATCCCTCCTCACTACCAATAAATACTACACTTGCAAGTGATTTT
CCATTCCGTTTTTCACCTAGCCTTTTACCTTCAGTACATGCCACATCGCA
CCACGTTATAAATGCTCATTCTGCTATTGTGGGGGTTAGCTCTAAACAAG
AATGCGGTGTTCAGGACCCAACAACGAATAATAGATATCCAAGGAACCTG
GAAGCAAAGCACACATCAAATGCGCAATCAAATGAATCCAAGGAGACAAC
AAATGATAAAAAAAAACCCCATATTAAGAAGCCACTAAATGCGTTCATGC
TCTATATGAAGGGAAATGCGTGCTAATGTTGTTGCTGAATGCACTCTGAA
GAATCGGCTGCGATTAATCAGATTTTAGGAAGACGGTGGCATGCCTTGGG
GCGTGAGAGCAGCGAAGTATTACGAGTTGGCGCGAGGAGCGACACTGCAC
ATGCAATGTATCTGATTGAGCTTCTCGTACAATGCCTCCTCGCGCAAAAA
CGAGCGAGCAGGATACATGATGGAAGCAATATATGAAAAATGCCGGCCGG
TTCGACTAGATTCACGAGTTCAGTGTGCACCGTGCAGAAGTTTTTACCCT
TATTTTGGTTTACACAGGC
UFO01289.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pan-RI | 3795 | CG34403-RI | 697..1879 | 56..1214 | 5020 | 96.4 | Plus |
| pan-RH | 4219 | CG34403-RH | 697..1851 | 56..1187 | 4980 | 96.8 | Plus |
| pan-RQ | 4954 | CG34403-RQ | 697..1851 | 56..1187 | 4980 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 94421..94615 | 792..986 | 865 | 98.5 | Plus |
| 4 | 1348131 | 4 | 72429..72595 | 56..222 | 835 | 100 | Plus |
| 4 | 1348131 | 4 | 87015..87167 | 642..794 | 765 | 100 | Plus |
| 4 | 1348131 | 4 | 82637..82747 | 365..475 | 555 | 100 | Plus |
| 4 | 1348131 | 4 | 75068..75166 | 268..366 | 495 | 100 | Plus |
| 4 | 1348131 | 4 | 85711..85800 | 474..563 | 450 | 100 | Plus |
| 4 | 1348131 | 4 | 85852..85933 | 562..643 | 410 | 100 | Plus |
| 4 | 1348131 | 4 | 72815..72867 | 220..272 | 250 | 98.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:00:55 has no hits.
UFO01289.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:59:08 Download gff for
UFO01289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pan-RI | 697..1749 | 56..1100 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:30:58 Download gff for
UFO01289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pan-RI | 420..1472 | 56..1100 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:42 Download gff for
UFO01289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pan-RI | 697..1749 | 56..1100 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:42 Download gff for
UFO01289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 72429..72594 | 56..221 | 100 | -> | Plus |
| 4 | 72817..72862 | 222..267 | 100 | -> | Plus |
| 4 | 75068..75165 | 268..365 | 100 | -> | Plus |
| 4 | 82638..82746 | 366..474 | 100 | -> | Plus |
| 4 | 85712..85799 | 475..562 | 100 | -> | Plus |
| 4 | 85853..85933 | 563..643 | 100 | -> | Plus |
| 4 | 87017..87166 | 644..793 | 100 | -> | Plus |
| 4 | 94423..94615 | 794..986 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:59:08 Download gff for
UFO01289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 106338..106425 | 475..562 | 100 | -> | Plus |
| arm_4 | 106479..106559 | 563..643 | 100 | -> | Plus |
| arm_4 | 107643..107792 | 644..793 | 100 | -> | Plus |
| arm_4 | 115049..115241 | 794..986 | 98 | -> | Plus |
| arm_4 | 93055..93220 | 56..221 | 100 | -> | Plus |
| arm_4 | 93443..93488 | 222..267 | 100 | -> | Plus |
| arm_4 | 95694..95791 | 268..365 | 100 | -> | Plus |
| arm_4 | 103264..103372 | 366..474 | 100 | -> | Plus |
