UFO01290.5prime Sequence
1190 bp (1066 high quality bases) assembled on 2008-07-17
> UFO01290.5prime
AGATCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCA
GTCGACATGAAGGATAAGATGAGCCTGAACCGGAGCCGGGACAGAGACAT
CACCGCACACCAGCCGCTGCTCGACAACGATCGCCACAGCCCCAATCACA
ATCATTCCATTGCCATACCCAATTCGAATTCCAACTCCAACGAGTACCAT
CAGCATCCACACAACGATCGCACGTACCTCGTGGAGTGTCCCAACGGCAA
CTCGCTGATCAATAGCGGCAGTCAGGTGGCCAATACCATAGCTGGGACCA
TGTCGGCGGCAGCGGCAGCAGCATCCCGCCACAGCGGCACCAAGTACTCC
AAGCTGGAGAACGCCCTGGACAGTCCCAGTCACTATGGGCAGACGCATCA
CGGCGGCATGGACAGTCCGAGTCATAGGTACGTGGGCGAAACAGTGTCCA
TACAGCAGCGTATGATCCAGGGACAGGATGAGCAGCTAGACATGATCAGC
GATTCGATTGGTACCCTCAAGACGGTCTCGCGGCAAATTGGCGTTGAGCT
CGATGAGCAGGCCGTCATGCTAGACGACTTTGGGAACGAGTTCGATACCA
CGGAGTCCAAGTTGGATACGACCATGAAGAAAGTTGCCAAAGTCTTGCAC
ATGAATAATGATAAACGACAGTGGGCCGCCATTCTCATCCTATCCGGACT
GTTATTGTTTGTGATAATTTTGTTTATTATTTTGGCAAGCTTTCTAGACC
ATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAAT
CATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCT
TGTATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACA
AATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCA
AGCGAGCTCGATATCAAATTACGCCCCGCCCTGCACTCATCGCAGTACTG
TTGTAATTCATTAAGCATTCTGCGACATGCAGCATCACAAACGGCATGAT
GAACTTGATCGCAGCCGCATCAGCACTTGTCGCTTGCCTATATATTTGCC
ATGTGAAACGGGGCGAAGAGTTGTCAATTGCCGTTATCGAACTGGTACTA
CAGGAATGGCTGACCGAACCATTTCCAATAACCTTAGGAA
UFO01290.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syx6-RD | 1982 | CG7736-RD | 682..1359 | 57..734 | 3390 | 100 | Plus |
| Syx6-RB | 1361 | CG7736-RB | 431..1108 | 57..734 | 3390 | 100 | Plus |
| Syx6-RE | 1945 | CG7736-RE | 787..1464 | 57..734 | 3390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11221026..11221629 | 57..660 | 3020 | 100 | Plus |
| 2R | 25286936 | 2R | 11221783..11221857 | 660..734 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:38:27 has no hits.
UFO01290.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:53 Download gff for
UFO01290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx6-RE | 782..1475 | 50..744 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:16:17 Download gff for
UFO01290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx6-RD | 675..1368 | 50..744 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:12 Download gff for
UFO01290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx6-RE | 782..1475 | 50..744 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:12 Download gff for
UFO01290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11221017..11221629 | 44..660 | 99 | -> | Plus |
| 2R | 11221784..11221868 | 661..744 | 95 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:53 Download gff for
UFO01290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7108522..7109134 | 44..660 | 99 | -> | Plus |
| arm_2R | 7109289..7109373 | 661..744 | 95 | == | Plus |
