UFO01291.5prime Sequence
1211 bp (1048 high quality bases) assembled on 2008-07-17
> UFO01291.5prime
CGCATAACAAAAAGTATAGCATACATTATACGAAGTTATCAGTCGACATG
GACGTGTTCCTTATGATCAGGCGGCAAAAGACCACCATCTTCACGGACGC
CAAGGAGAACACAACGGTGGCCGAGCTGAAGCGAATGATTGAGGGCATAC
TAAAGGTGCAGCCCGTGGACCAGCGGTTATACAATCAGGACAACGATGTC
ATGGAGGACGACAGCACGTTGCAGGACTACGGCGTGACGGTGTCCACGGC
CAAGGCGCAGGCTCCGGCACAGCTGGGCTTGACATTCAGGAACGAGGTGG
GCGACTTTGAGACACTGGACATGACACCCTACTCGGCACCACCAGACTTA
CCCGAAGTCATGAAAAACCAAGAGGCCTCGAACGGACAGGAGCAGGTGGC
AGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTC
ATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCC
TGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCA
ACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGAT
CTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTG
CCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGA
AGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACC
TTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAA
GTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGG
GATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAAGGGAAATA
GGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAA
ACTGCCGGGAATCGTCGTGTATTCACTCCAGAGCGATGAAAACGTTTCAG
TTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCATATCACC
AGCTACACGTCTTTCATGCATACGAAATCCGATGACATTCATCAGCGGCA
GAAGTGATAAAGGCGATAAACCTGTGCTATTTTCTTACGTCTTAAAAGCC
GTAATCAGCTGAACGACTGTAAGTACATGAGACGCACTGAACTGAAAAGT
CCTCATAATGG
UFO01291.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EloB-RA | 1207 | CG4204-RA | 395..748 | 48..401 | 1770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20578913..20579059 | 290..144 | 735 | 100 | Minus |
| 3R | 32079331 | 3R | 20578681..20578794 | 401..288 | 570 | 100 | Minus |
| 3R | 32079331 | 3R | 20579138..20579233 | 145..50 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:28:45 has no hits.
UFO01291.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:07 Download gff for
UFO01291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elongin-B-RA | 387..752 | 39..406 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:24:48 Download gff for
UFO01291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elongin-B-RA | 408..773 | 39..406 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:01 Download gff for
UFO01291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EloB-RA | 387..752 | 39..406 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:01 Download gff for
UFO01291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20578681..20578792 | 290..401 | 100 | <- | Minus |
| 3R | 20578914..20579058 | 145..289 | 100 | <- | Minus |
| 3R | 20579139..20579242 | 39..144 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:07 Download gff for
UFO01291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16404403..16404514 | 290..401 | 100 | <- | Minus |
| arm_3R | 16404636..16404780 | 145..289 | 100 | <- | Minus |
| arm_3R | 16404861..16404964 | 39..144 | 95 | | Minus |
