UFO01292.5prime Sequence
1223 bp (1051 high quality bases) assembled on 2008-07-17
> UFO01292.5prime
GATCTGCGGCCGCATAACAACGTATAGCATACATTATACGAAGTTATCAG
TCGACATGAATATAAATCTGCCGAATTTCAATGTGAAGAACCTGGTGAAG
GAGGCGGGCAGCACAATATCACGAGTGGTGCAGCTCACGGAGGAGAAACT
GGGCACCACGGAGCGCACCGAGTACGACTTGCACTTCCAGAATCTCGCCG
AGCGGGCTGATGTGACCAAGACATGGACGGAGAAGATAGTGCGCGACACA
GAGTCGGTGCTGATACCCAATCCTCAGAACCGGGTCGAAGACTTCATCTT
CGAGAAGATTGAAAAGTCGAAGCCAAAAAGGTTGAGCAACCTAGAGCACC
TGGCTCTGGACATGATCGAGGCTGGGGGCGATTTCGGGCAGGATTTACCC
TATGGTCAGGCTCTGATCAAGGTCGGCCAAGCGGAACAGAAACTGGGCCA
GTGCGAGCACGACTTTATAGCCACCTCGGGCATTTGCTTTACACAGCCGT
TGCGCAAGTTCCTAGACGGCGAAATGAAGACAATTGGCAAGGAGCGAGGC
ATCCTGGAGACCAAGCGCCTGGATCTGGACGCCTGCAAGAACAGGGTGAA
GAAAGCGCGCAGCATGCTGGGTCAGCAATCGAAAGATGGCATCTCGCCAG
AGGCCGTCTTGGAACAGGCGGAACGGGACTTGCGGGTGGCTCAGGCCGAG
TTCGACCGGCAGGCGGAGATTACCAAGCTGCTGCTGGACGGGATCAGCAC
ATCGCAGGCATCTCATTTGCGCCACTTGCACGCCTTCATCCAGACGCAAG
TGCGCTACTACAAGCAGTGCGGCGATGTCATGGAGCAGCTGCAGCGTGAA
CTGGCCAACTTGGGAGGCCCCACGCCATACATTCCGCTCGACGTGAACGA
GGCCAGTGCCAGCAAGTCCAACATATCGTCCGGAGCCGCAGCCCGTGGTC
CTGGCAACAATCACTCTGCCATATGGCTGCCACCGGGCCACAAGCCTATC
AGCCCATGCCACGTCAGCACGGATCAGATGCAGAGGGCACGCGTCTTTGC
TCTACGACGTCACGATCCAACCGAGCTATTGAGCGCCATGAGGTGATCTC
GTGACGATGCTCACCAGTAACGAGAATAATGTACGAATGCTCTATTGAGG
CTGGTCCATGCCATGTGAATGTCTCGACGAAAGAGACAAAGTTTACCCCT
GCAGGCCTTCTATGAGAACCAAT
UFO01292.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EndoB-RA | 2226 | CG9834-RA | 114..1188 | 56..1120 | 4985 | 98.3 | Plus |
| EndoB-RC | 2190 | CG9834-RC | 114..916 | 56..858 | 4015 | 100 | Plus |
| EndoB-RD | 2154 | CG9834-RD | 114..689 | 56..631 | 2880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19309816..19310316 | 631..131 | 2505 | 100 | Minus |
| 2R | 25286936 | 2R | 19309393..19309585 | 858..666 | 965 | 100 | Minus |
| 2R | 25286936 | 2R | 19308627..19308813 | 1045..859 | 745 | 97.9 | Minus |
| 2R | 25286936 | 2R | 19310475..19310552 | 133..56 | 390 | 100 | Minus |
| 2R | 25286936 | 2R | 19309662..19309699 | 668..631 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:01:47 has no hits.
UFO01292.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:26 Download gff for
UFO01292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| endoB-RA | 114..1206 | 56..1135 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:15:01 Download gff for
UFO01292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| endoB-RA | 141..1233 | 56..1135 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:17 Download gff for
UFO01292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EndoB-RA | 114..1206 | 56..1135 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:17 Download gff for
UFO01292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19309393..19309583 | 668..858 | 100 | <- | Minus |
| 2R | 19309663..19309698 | 632..667 | 100 | <- | Minus |
| 2R | 19309816..19310313 | 134..631 | 100 | <- | Minus |
| 2R | 19308627..19308813 | 859..1045 | 97 | <- | Minus |
| 2R | 19310475..19310552 | 56..133 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:26 Download gff for
UFO01292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15196132..15196318 | 859..1045 | 97 | <- | Minus |
| arm_2R | 15196898..15197088 | 668..858 | 100 | <- | Minus |
| arm_2R | 15197168..15197203 | 632..667 | 100 | <- | Minus |
| arm_2R | 15197321..15197818 | 134..631 | 100 | <- | Minus |
| arm_2R | 15197980..15198057 | 56..133 | 100 | | Minus |
