UFO01293.5prime Sequence
1202 bp (1005 high quality bases) assembled on 2008-07-17
> UFO01293.5prime
AAAAAGGATAGCATACATTATACGAAGTTATCAGTCGACATGTTGATCAA
AGTGAAGACCCTGACCGGCAAGGAAATCGAGATCGACATTGAGCCCACGG
ACAAGGTAGATCGCATCAAGGAGCGCGTGGAGGAAAAGGAAGGCATTCCG
CCCCAGCAACAGCGTCTTATTTTCTCCGGCAAGCAAATGAATGACGATAA
AACCGCGGCGGACTACAAAGTGCAAGGTGGATCCGTTCTTCACTTGGTAT
TGGCTCTGCGAGGAGGTGATTCAATCCTAACACCTTGTGTGGCAAGCTTT
CTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAA
TCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGAC
TAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTT
CTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAG
GAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCG
CAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACA
AACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTT
GCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATA
TTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGA
GACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTT
CACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAA
TCGTCGTTGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATG
GAAACGGTGTAACAAGGGTGAACACTATCCCATATCACCAGCTCACCGTC
TTTCATTGCATACGAAATTCCGGATGAGCATTCATCAGCGGGCAGAATGT
GAATAAGGCCGGATAAACTTGTGCTTTTTTTTCTTTACGGTCTTTAAAAG
CGTAATATCAGCTGACGTCTGTTATAGTACATTGGCACTGACTGAATGCC
CTCAATGTTTCTTTACGATGCAATTGATATCACGTTGCTATTCAGGATTT
TTTCCATTAGCTCTGTTGAGATCTACTCGGAAGCATACTTTATGGGAGGT
AT
UFO01293.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nedd8-RB | 612 | CG10679-RB | 123..374 | 40..291 | 1260 | 100 | Plus |
| Nedd8-RA | 471 | CG10679-RA | 123..374 | 40..291 | 1260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18951406..18951539 | 189..56 | 670 | 100 | Minus |
| 2L | 23513712 | 2L | 18951244..18951346 | 291..189 | 515 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:23:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hobo | 2959 | hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). | 382..436 | 1099..1153 | 131 | 70.9 | Plus |
UFO01293.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:49 Download gff for
UFO01293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd8-RA | 115..379 | 32..298 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:19:25 Download gff for
UFO01293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd8-RA | 1..255 | 40..295 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:01 Download gff for
UFO01293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd8-RA | 115..379 | 32..298 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:01 Download gff for
UFO01293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18951244..18951346 | 189..291 | 100 | <- | Minus |
| 2L | 18951407..18951537 | 58..188 | 100 | <- | Minus |
| 2L | 18951698..18951715 | 40..57 | 100 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:49 Download gff for
UFO01293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18951244..18951346 | 189..291 | 100 | <- | Minus |
| arm_2L | 18951407..18951537 | 58..188 | 100 | <- | Minus |
| arm_2L | 18951698..18951715 | 40..57 | 100 | == | Minus |
