UFO01301.5prime Sequence
1180 bp (1015 high quality bases) assembled on 2008-08-22
> UFO01301.5prime
AGATCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCA
GTCGACATGATTATTCCAATCCGTTGTTTCACCTGCGGCAAGGTCATTGG
CAACAAGTGGGAGTCGTATTTGGGTCTCCTGCAAGCGGAATACACCGAAG
GAGATGCCCTGGATGCTTTGGGTCTAAAGAGGTACTGCTGCCGTCGCATG
CTCCTGGGCCACGTGGATCTTATCGAAAAACTGCTCAACTATGCTCCTCT
GGAGAAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAA
GTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGG
AGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCG
GCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTA
CTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCC
GCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGA
CATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATC
AGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGC
GAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCA
CCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGG
AAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTG
TAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACG
TTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCAT
ATCACCAGCTCACCGTCTTTCATTGCCATACGAAATTCCGGATGAGCATT
CATCAGCGGGCAGATGTGAATAAGGCCGGATAAACTTGGTGCTTATTTTT
CTTACGGTCTTTAAAAGGCGTAATATCAGCTGACGTCTGATATAGGTACA
TGAGCACTGACTGAAATGCTCAATGTTCTTACGATGCATGGGAAATATCA
CGTGCAATTCAGTGATTTTTCTCCATTTAAGCTCTAGCTCTGAAGATCCT
AACTCGTAGCTACTTAACGAGTTAGATCCA
UFO01301.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpb10-RA | 405 | CG13628-RA | 108..308 | 57..257 | 1005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24717795..24717901 | 151..257 | 535 | 100 | Plus |
| 3R | 32079331 | 3R | 24717618..24717712 | 57..151 | 475 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:56:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 826..893 | 123 | 68.1 | Plus |
UFO01301.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:19 Download gff for
UFO01301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb10-RA | 108..312 | 57..261 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:10:27 Download gff for
UFO01301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb10-RA | 65..269 | 57..261 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:30:31 Download gff for
UFO01301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb10-RA | 108..312 | 57..261 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:30:31 Download gff for
UFO01301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24717618..24717712 | 57..151 | 100 | -> | Plus |
| 3R | 24717796..24717910 | 152..263 | 95 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:19 Download gff for
UFO01301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20543340..20543434 | 57..151 | 100 | -> | Plus |
| arm_3R | 20543518..20543632 | 152..263 | 95 | <- | Plus |
