UFO01303.5prime Sequence
1230 bp (1074 high quality bases) assembled on 2008-08-22
> UFO01303.5prime
ATCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGT
CGACATGTTGCTGAAACAGTTGCCCCAGGCTGTTCAGCAGATACGCTGCA
TCTCATCGGCCACGACGGCGGTTACCAGGCTGCATCGCTCGGTTTACTGC
CGGCTATATCCCACAGTTGTGGTGCAACCCGATGGATCCACGATAAACAT
CCGCTATCACGAGCCCAGGAAGATTATCAAGCTTCCCTTGGATCTGAGCA
CCTTAACCGATGCGGAGCGCAGAGCGAGATTGGAGGCCCGCAAGCCGCGC
AAGAAGGTCAAGATCATGGAGGAGGTGGAGGACAACTTCAACGCCAAGAA
GTACATGAAGTACATCAAAAAGAAGGCAAGCTTTCTAGACCATTCGTTTG
GCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCAT
AATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTC
ACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGAT
GGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTC
GATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATT
CATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACC
TGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCC
CATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAAT
CAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTC
TCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCAC
ATCTTGCGAATATATGTGTAGAAACTGCCGGAATCGTCGTGTATTCACTC
AGAGCGATGAAACGTTTCAGTTTGCTCATGGAAACGGTGTAACAGGTGAC
ACTATCCCATATCACCAGCTCACGTCTTTCATGCATACGAAATTCGATGA
GCATTCATCAGGCGGGCAGATGTGATAAGCGAAAAACTGGTGCTATTTTT
CTTACGTCTTTAAAAGGCCGTAATATCCAGCTGACGTCTGATTAGTACTG
GAACACTGACTGATGCCAGTTCTTTACAAGTCATGCAATATATCACACGG
GGGAATTCCAGGGAATTTTTTCTCCCATAT
UFO01303.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:14:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL55-RA | 456 | CG14283-RA | 88..408 | 55..375 | 1605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:14:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19094642..19094818 | 231..55 | 885 | 100 | Minus |
| 3R | 32079331 | 3R | 19094442..19094587 | 375..230 | 730 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:14:01 has no hits.
UFO01303.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:16 Download gff for
UFO01303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL55-RA | 73..409 | 43..381 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:10:30 Download gff for
UFO01303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL55-RA | 68..404 | 43..381 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:48 Download gff for
UFO01303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL55-RA | 76..412 | 43..381 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:48 Download gff for
UFO01303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19094442..19094585 | 232..375 | 100 | <- | Minus |
| 3R | 19094642..19094830 | 43..231 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:16 Download gff for
UFO01303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14920164..14920307 | 232..375 | 100 | <- | Minus |
| arm_3R | 14920364..14920552 | 43..231 | 97 | | Minus |
