UFO01304.5prime Sequence
1222 bp (1072 high quality bases) assembled on 2008-08-22
> UFO01304.5prime
TCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTC
GACATGCCGGCCAAAAAGAGAACTGCCGCGTCGACCAGCAAAAATAGCGA
TTCGCCATTAAGTCCGCACACAGACGATCCAGCGTACAAAGAAAAAAGAA
AGAAAAACAATGAGGCTGTTCAGCGCACACGCGAAAAGACCAAGAAATCG
GCCGAGGAACGTAAGAAACGCATCGATGATTTGAGGAAGCAAAACGATGC
TCTTAAGGTTCAGATCGAGACGAGTGAAAAACATATATCTACGCTTAGAG
ATCTGATCATTCAGGGTGAGAAAACGGAGGACGGCCATCGAATCATCCAG
GAGATTCTCGCTGAACCAGATCCCGATCCCAAGGACAATGACGCAAGCTT
TCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATA
ATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGA
CTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGT
TCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACA
GGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATC
GCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCAC
AAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCT
TGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCAT
ATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTG
AGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTT
TCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAACTGCCGGAAA
TCGTCGTGTATCACTCAGAGCGATGAAACGTTTCAGTTTGCTCATGGAAA
CGGTGTACAGGTGACACTATCCCATATCACAGCTCACGTCTTCATGCATA
CGAAATCGATGACCATCATCAGGCGGCAGATGTGATAAGGCGAAAACTTG
TGCTATTTTCTTACGTCTTAAAGGCGTAAATCAGCGTGACGCTGTTTAGT
ACATGGACACTGACTGATGCTAGGTCTACAGGCATGGATATCACACGGAG
ATATCCAGGAATTTTTCTCCAA
UFO01304.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:53:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6272-RB | 614 | CG6272-RB | 77..415 | 54..392 | 1695 | 100 | Plus |
| CG6272-RA | 543 | CG6272-RA | 77..415 | 54..392 | 1695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:53:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11097645..11097874 | 392..163 | 1150 | 100 | Minus |
| 3L | 28110227 | 3L | 11097999..11098110 | 165..54 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:53:22 has no hits.
UFO01304.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:05 Download gff for
UFO01304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6272-RA | 77..418 | 54..396 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:10:32 Download gff for
UFO01304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6272-RA | 77..418 | 54..396 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:19 Download gff for
UFO01304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6272-RA | 77..418 | 54..396 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:19 Download gff for
UFO01304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11097645..11097872 | 165..392 | 100 | <- | Minus |
| 3L | 11098000..11098110 | 54..164 | 100 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:05 Download gff for
UFO01304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11090745..11090972 | 165..392 | 100 | <- | Minus |
| arm_3L | 11091100..11091210 | 54..164 | 100 | == | Minus |
