UFO01306.5prime Sequence
1238 bp (1054 high quality bases) assembled on 2008-08-22
> UFO01306.5prime
GCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGAC
ATGGAGCCCACCAATTCGGAGTCGCGGCACCGCCTAAATGGAGGGGGCAG
GAGTTCCGCGCCAGCAGGCTCCGGAGAGTACATCAAGGTGGTGGAGTCCC
AATGCGAGACCGATGGATTCGTTAATGAACAGTGGACGGAACCGGCGATG
CCAGGTCCAGTGCCTTGGAAGACCATTATTATCATTCTTTTGCTGTTTAT
CGGTGGCATTGTTTGCATCGCCTTTGCCACCTTAAACTGGGTGACGGACA
CGAGCCGGGAGCGATCGGATCGGGTGTGGGCGTTGGGTATCATCGGGGCA
CTGACCTTCATCCCGGGAAGCTACTATGTGTACGTGCTCTTCTGCATAAT
GCTCAACCGCAACGGATTCACCATGGACGAGATACGAAGACTCGGCGCAA
GCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAAT
CATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTC
ATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGA
GCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATC
AACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACT
CATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCA
TCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTC
GCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGT
CCATATTGGCCACGTTTAATCAAAACTGGTGAAACTCACCCAGGGATTGG
CTGAGACGAAAAACATATTCTCATAAACCCTTTAGGGAAATAGGCCAGGT
TTCACCGTACACGCCACATCTTGCGATATATGTGTAGAACTGCGGAAATC
GTCGTGTATTCACTCCAGAGCGATGAACGTTTCAGTTGCTCATGAAAACG
GTGTACAGGTGAACACTATCCCATATCACAGCTCCACGTCTTTCATGCAT
CGAATCGGATGACATTCATCAGCGGCAGAATGATAGCGATAACTTGTGCT
ATTTTCTTACGGCTGAAGGCATTCCACCGTAACGCTTGTTATAGGTACAC
ATTGGGAGCACTGTGCTACGCGTGAAGTTGCCTCTCTA
UFO01306.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2611-RA | 634 | CG2611-RA | 63..458 | 51..446 | 1980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20650251..20650462 | 51..262 | 1060 | 100 | Plus |
| 2L | 23513712 | 2L | 20650537..20650722 | 261..446 | 930 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:45:01 has no hits.
UFO01306.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:09 Download gff for
UFO01306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2611-RA | 58..462 | 43..450 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:10:33 Download gff for
UFO01306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2611-RA | 53..457 | 43..450 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:21 Download gff for
UFO01306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2611-RA | 58..462 | 43..450 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:21 Download gff for
UFO01306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20650246..20650460 | 43..260 | 98 | -> | Plus |
| 2L | 20650537..20650729 | 261..451 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:09 Download gff for
UFO01306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20650246..20650460 | 43..260 | 98 | -> | Plus |
| arm_2L | 20650537..20650729 | 261..451 | 98 | -> | Plus |
