UFO01307.5prime Sequence
1204 bp (1057 high quality bases) assembled on 2008-08-22
> UFO01307.5prime
TGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGA
CATGGCCTCAAATAGCATGCCAGAGGAGAATTTCGAGGGCGGTGATTTCA
ACTTTGATGACGACGCGGAGGATGACCAATTTGTGGCTACCAACTCAGGA
CGAAAGCGCCTATTCAGCAAGGAGCTGCGCTGCATGATGTTCGGATTCGG
AGACGACAAAAATCCATACACGGAAACCGTAGATCTGTTGGAAGACCTGG
TCATTGAGTATATAGCTGAGACCACTCACCGGGCAATGGAGATCGGTCGA
ACAGGCCGTGTTCAAGTCGAAGACATTATCTTCCTGGTGCGCAAAGATCC
CCGAAAGTACGCTAGGGTGAAGGATCTTCTGACCATGAACGAGGAGTTGA
AAAAGGCACGAAAGGCCTTCGATGAGATCAAGTATGTGGGCACCGAAGGC
AAGCTCAAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGT
AAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTA
GGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCC
CGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCAT
TACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCC
CCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCC
GACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCA
TCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGG
GCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACT
CACCCAGGGATTGGCTGAGACGAAAACATATTCTCAATAAACCCTTTAGG
AAATACGCCAGGTTTCACGTAACACGCACATCTTGCGAATATATGTGTAG
AACTGCGGAAATCGTCGTGTATCACTCAGAGCGATGAAACGTTCAGTTGC
TCATGAAACGTGTACAGTGAACCTATCCATATCACAGCTCACGTCTTTCA
TGCATACGAATCGGAAGAACATCATCAGCGGCCAGAATTGAATAGGCGAT
AACTTGCTAGTTCTGACGGCTGAAGGCGTAATACACGTACGGCCTGTATA
GGTC
UFO01307.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:53:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taf13-RA | 628 | CG10756-RA | 82..489 | 52..459 | 2025 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:53:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20093317..20093660 | 440..97 | 1705 | 99.7 | Minus |
| 2L | 23513712 | 2L | 20093724..20093768 | 96..52 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:53:24 has no hits.
UFO01307.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:06 Download gff for
UFO01307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf13-RA | 76..496 | 45..465 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:10:34 Download gff for
UFO01307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf13-RA | 73..493 | 45..465 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:20 Download gff for
UFO01307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf13-RA | 76..496 | 45..465 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:20 Download gff for
UFO01307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20093227..20093246 | 440..459 | 100 | <- | Minus |
| 2L | 20093318..20093660 | 97..439 | 99 | <- | Minus |
| 2L | 20093724..20093774 | 45..96 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:06 Download gff for
UFO01307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20093227..20093246 | 440..459 | 100 | <- | Minus |
| arm_2L | 20093318..20093660 | 97..439 | 99 | <- | Minus |
| arm_2L | 20093724..20093774 | 45..96 | 94 | | Minus |
