UFO01308.5prime Sequence
1216 bp (1032 high quality bases) assembled on 2008-08-22
> UFO01308.5prime
TCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTC
GACATGGGCGAACCAAGGAGCCAACCACCCGTGGAGCGTCCACCGACCGC
GGAAACCTTTCTGCCCCTCAGCCGCGTGCGAACGATCATGAAGAGCTCCA
TGGACACGGGCTTGATCACCAACGAGGTGCTCTTCCTGATGACCAAGTGC
ACGGAGCTATTCGTTCGCCATTTGGCGGGCGCGGCATACACGGAGGAATT
CGGCCAGCGACCGGGCGAAGCGCTCAAGTACGAGCATCTCTCCCAGGTGG
TCAATAAGAACAAGAATCTGGAGTTTCTGCTGCAGATCGTGCCGCAAAAG
ATCCGTGTACACCAGTTCCAGGAGATGCTGCGGCTAAATCGCTCCGCCGG
CAGCGACGACGACGATGACGACGACGATGATGACGATGAAGAAGAGTCCG
AATCGGAATCGGAGTCTGATGAAGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAC
CAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGG
AGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGA
TATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCA
TTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTG
AATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCA
TGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCA
AAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTC
ATAAACCCTTTAGGAATAGGCCAGGTTTCACCGTAACACGCACATCTGCG
ATATATGGTGTAGAAACTGCGGAAATCGTCGTGTATCACTCAGAGCGATG
AAACGTTTCAGGTGCTCATGAAAACGGTGTAACAGGTGAACCTATCATAT
CACCAGCTCACGTCTTTTCATTGCATACGAATCGATGAACATCACAGGCG
GGCCAAATGATAGCGATACCTTGGCCTATTTCTTACGGCTTAGAAGGGCG
TAAATTCACTGTTAAC
UFO01308.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Chrac-16-RB | 737 | CG15736-RB | 89..508 | 54..473 | 2100 | 100 | Plus |
| Chrac-16-RA | 685 | CG15736-RA | 89..508 | 54..473 | 2100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12017454..12017873 | 473..54 | 2100 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:42:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 7909..7980 | 261..192 | 111 | 65.3 | Minus |
UFO01308.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:16 Download gff for
UFO01308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chrac-16-RA | 89..508 | 54..473 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:10:36 Download gff for
UFO01308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chrac-16-RA | 84..503 | 54..473 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:47 Download gff for
UFO01308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chrac-16-RA | 89..508 | 54..473 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 20:26:47 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 22:47:16 has no hits.
