UFO01310.5prime Sequence
1174 bp (1012 high quality bases) assembled on 2008-08-22
> UFO01310.5prime
GCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGAC
ATGGACAAGAAATCCTCGCCGGTGCGACGACAAAAGCGGCAGGCGAAGGT
GATCGAGGAGAACTTCTGGGACTGCAGCGTCTGCACATATAGAAACTCGG
CGGAGGCCTTCAAGTGTCGCATGTGCGACGTGCGGAAAGGAACCTCCACG
CGAAAGCCACGCCTGAACTCAGCGCTAGTCGCCCAGCAGGCCGCCACTTT
GCCAGGAGCCAGTGTCAACATGCCCAACGGGAAGTCCGCCTCCGGATCAC
GGCATGGCAGTGGGCACGACCGGCAGAGGCACAAGCGGTATCCGGCACGG
TTGAAAAACGTGGACCGATCGACGGCACAGACGCGAGAGGTGACGGTCAA
CTCGGTGACCGTGTTCATCACAGAGTACAAGGCCAAGCCGGTGAGCAGCC
GACGCGAATCCAGTGAGCAGAGCTTCAGCGAGAGCAACGACAGCCGGAGT
GCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCA
TAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCT
GGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAA
CCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATC
TATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGC
CACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAA
GCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCT
TGTCGCCTTGCGTATAATATTTGCCCATGGTGAAACGGGGGCGAAGAGTT
GTCCATATTGCCACGTTTAAATCAAAACTGGTGAACTCACCAGGATTGCT
GAGACGAAAACATATTTCTCATAACCCTTTAGGAATAGCAGTTTTCACGT
ACACGCCACATCTGCGAATATATTGTGTAGAACTGCGAATCGTCTGTATT
CACTCCGAGCGATGAAACGTTCAGTTGCTATGAACCGGTACAGGTGAACC
TATCCATTACAGCTACGCTTCATGCATCGATCGATACTCAAGCGCAATTA
TAGCCGAATAACTGGCTATTTCTT
UFO01310.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RYBP-RB | 2242 | CG12190-RB | 521..970 | 51..500 | 2250 | 100 | Plus |
| RYBP-RA | 2064 | CG12190-RA | 343..792 | 51..500 | 2250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22671628..22671940 | 188..500 | 1565 | 100 | Plus |
| 2R | 25286936 | 2R | 22671107..22671246 | 51..190 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:46:56 has no hits.
UFO01310.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:57:07 Download gff for
UFO01310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RYBP-RA | 356..810 | 45..500 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:10:18 Download gff for
UFO01310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12190-RA | 351..805 | 45..500 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:18:09 Download gff for
UFO01310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RYBP-RA | 338..792 | 45..500 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:18:09 Download gff for
UFO01310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22671107..22671245 | 51..189 | 100 | -> | Plus |
| 2R | 22671630..22671940 | 190..500 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:57:07 Download gff for
UFO01310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18558612..18558750 | 51..189 | 100 | -> | Plus |
| arm_2R | 18559135..18559445 | 190..500 | 100 | == | Plus |
