UFO01311.5prime Sequence
1140 bp (962 high quality bases) assembled on 2008-08-22
> UFO01311.5prime
TCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTC
GACATGACAGCCACGGGCAGAAAGAAGCTGGACGAGCTTTACCATCCGGT
AACGGATCGGTCCGAGTTCTATGGCATGCAGGACTTCGCCAAGCCGCCGG
TGCTATTCTCGCCCGCCGAGGACATGGAGAAGAGCTTCTACGGCCATGAG
ACTGACTCGCCGGACCTGAAGGGGGCCTCACCGTTCCTGCTCCACGGCCA
GAAGGTGGCCACGCCGACGCTCAAGTTCCACAACCATTTTCCGCCCGACA
TGCAGACCGATAAGAAGGATCACATACTGGACCAGAACATGTTGACCAGC
ACACCCCTGACCGACTTTGGTCCGCCGATGAAGCGCGGCAGGATGACGCC
GCCGACCTCGGAACGCGTGATGCTGTACGTGCGGCAGGAGAACGAGGAGG
TGTATACACCGTTGCACGTGGTGCCGCCCACCACGATCGGCCTGCTAAAT
GCGGATTACTGCGAAAATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCG
GGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACA
ACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATA
AAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTC
TGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCA
AATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAG
CATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGATCGC
CAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGA
AACGGGGCGAGAGTGTCGTATGGCCACGTTAAATCAAGCTGTGAAACTCA
CCCAGGATGCTGAAACGAAACAATCTCATAACCCTTTAGGAATAGGCAGG
TTTCACGTACACCGCCATCTGCGATTATGTGTAGACTGCGATCGTCTGTA
TAATCAAGCGATGACGTCAGTTGCTCATGACGGTACAGGTAACCTACATA
CCGTACGCTCATGCATCATCAGCATAACTCACAGCGGACT
UFO01311.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| grh-RO | 3094 | CG42311-RO | 1799..2248 | 54..503 | 2250 | 100 | Plus |
| grh-RL | 6692 | CG42311-RL | 4105..4554 | 54..503 | 2250 | 100 | Plus |
| grh-RH | 3972 | CG42311-RH | 3295..3744 | 54..503 | 2250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17839594..17839790 | 308..504 | 985 | 100 | Plus |
| 2R | 25286936 | 2R | 17839093..17839221 | 54..182 | 645 | 100 | Plus |
| 2R | 25286936 | 2R | 17839313..17839439 | 181..307 | 635 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:35:11 has no hits.
UFO01311.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:11 Download gff for
UFO01311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grh-RH | 3295..3741 | 54..500 | 100 | -> | Plus |
| grh-RH | 3808..3824 | 501..518 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:10:20 Download gff for
UFO01311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grh-RE | 447..911 | 54..518 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:22:10 Download gff for
UFO01311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grh-RH | 3295..3741 | 54..500 | 100 | -> | Plus |
| grh-RH | 3808..3824 | 501..518 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:22:10 Download gff for
UFO01311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17839093..17839221 | 54..182 | 100 | -> | Plus |
| 2R | 17839315..17839439 | 183..307 | 100 | -> | Plus |
| 2R | 17839594..17839789 | 308..503 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:11 Download gff for
UFO01311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13726598..13726726 | 54..182 | 100 | -> | Plus |
| arm_2R | 13726820..13726944 | 183..307 | 100 | -> | Plus |
| arm_2R | 13727099..13727294 | 308..503 | 100 | -> | Plus |
