UFO01312.5prime Sequence
1173 bp (1007 high quality bases) assembled on 2008-08-22
> UFO01312.5prime
CTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCG
ACATGAGCAATAGCGAGGACTCGCAGCAGTATCTGAACGACATGCTGGTC
AAGGAGGAGGACGAGGCGTCCGGCGACGATTCGGACAAACAGGATGGAGG
GATAATGCTACGCGAACAGGACCGATTTCTGCCCATCTGCAACATCATTA
AGATCATGAAGGTTCCGGTGCCCCAGAACGGCAAGATAGCCAAGGATGCA
CGAGAGTGCATCCAGGAGTGTGTCTCCGAGTTCATATCCTTCATTAGCAG
TGAGGCCATCGAACGTAGCGTCGCGGAGAATCGCAAGACAGTCAACGGGG
ACGACCTGCTGGTGGCGTTCAGCAATCTGGGATTCGACAATTACGTGGAA
CCACTGTCCATTTACCTGCAAAAGTACCGAGAGTCGAACAAATCGGATCG
TAATCTCTTTCTGGACGCCAGTTATCCGCACAACGAAGATGGGTCCTCCG
CAAACGATGCGGGGAAACAGGCAAGCTTTCTAGACCATTCGTTTGGCGCG
CGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCA
CAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAA
TAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGT
TCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATAT
CAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTA
AGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAAT
CGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATATATTTGCCCATGGT
GAAACGGGGGCGAGAGTTGTCCATATTGCCACGTTTAAATCAAACTGGTG
AAACTCACCAGGATGCTGAGACGAAAACATATCTCATAACCCTTTAGGAA
TAGCAGTTTCACGTACACGCCACATCTGCGAATATATGTGTAGAACTGCG
AATCGTCTGTATTCCATCGAGCGATGAAACGTTCAGTTGCTCATGAACCG
GTAACAGGTGAACCATATCCAATACAGTCCACGGCTTCATGCCATCGATT
CGGAGTAAACATTCTCATAAGGC
UFO01312.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nf-YB-RB | 796 | CG10447-RB | 93..560 | 53..520 | 2340 | 100 | Plus |
| Nf-YB-RA | 928 | CG10447-RA | 93..560 | 53..520 | 2340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19736272..19736580 | 125..433 | 1545 | 100 | Plus |
| 2L | 23513712 | 2L | 19736632..19736720 | 432..520 | 445 | 100 | Plus |
| 2L | 23513712 | 2L | 19736136..19736208 | 53..125 | 365 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:15:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G5 | 4856 | G5 G5_DM 4856bp | 583..664 | 150..67 | 135 | 65.5 | Minus |
UFO01312.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:33 Download gff for
UFO01312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nf-YB-RA | 87..563 | 45..524 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:10:22 Download gff for
UFO01312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10447-RA | 76..552 | 45..524 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:19 Download gff for
UFO01312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nf-YB-RA | 87..563 | 45..524 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:19 Download gff for
UFO01312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19736141..19736208 | 58..125 | 100 | -> | Plus |
| 2L | 19736273..19736580 | 126..433 | 100 | -> | Plus |
| 2L | 19736634..19736720 | 434..520 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:33 Download gff for
UFO01312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19736273..19736580 | 126..433 | 100 | -> | Plus |
| arm_2L | 19736634..19736720 | 434..520 | 100 | == | Plus |
| arm_2L | 19736141..19736208 | 58..125 | 100 | -> | Plus |
