UFO01315.5prime Sequence
1208 bp (1025 high quality bases) assembled on 2008-08-22
> UFO01315.5prime
AGATCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCA
GTCGACATGATGGGCACTATGTCGCTGCGCCAGCCAGAGAATTGGCTATA
CGAGATTTGGCAGAAGGGCTACGACAGCCCCTGCTATGTGATGGTGCCTA
ATGCAAAAGATCTGGTCAAGTCGCATCTCATGATAGCGGTGCGCGAGGAG
GTGGAAGTGCTAAAAGAGCGCATCTCCGAGCTGATGGACAAGATCAACAA
GCTGGAGCTCGAGAACAGCATTCTCAAGTCGAACATCCCGCAGGAGACAC
TGCAGCAGCTGCAGTTGCAGCTACAACTCGCCGCACCGCCGGCCACGCCC
GCCATTCAAGCGGCACCGGCGGTACAAAGTGTCGTTGCTCCAGCTGCCGC
GGGTCAGGCAGTTCAGCAGCAGGCCGCTGGAGCGGTAGCGGTAACGGGTG
TGGCCACCAGTCCAGCGTCCGCGGTGGTACCCACGAGCATTCCCAACGGC
AGCGCCGAGAACGGCAGCAGTGCAGTCGAGTCAGCAGCGGTATCGGTGGA
GCAGCAGGTGCAGCAGGTGACATCAGCAGCGGCAGCAGCAGCATCGGTAG
TCACAGCCAATGGTCCCATGTCCGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAC
CAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGG
AGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGA
TATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCA
TTAAGCATTCTGCCGACATGAAGCCATCACAAACGGCATGATGACCTGAT
CGCAGCGCATCAGCACTTGTCGCTTGCGTATATATTTGCCATGTGAAACG
GGGCGAGAGTGTCATATTGCCACGTTTAATCAACTGTGAACTCACCAGGA
TGCTGAAACGAAAACTATTCTCATAACCCTTTAGAATAGCAGTTTCACGT
AACACGCCCAACTGCAATATATTGTGTGAACTGGCGGAAATGTCTGGATA
TCAGCGATATCGTTCAGTTGTCTATGACCGGATTAACAAGGGGTAAACAA
TTCCATTT
UFO01315.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bun-RP | 5139 | CG42281-RP | 3391..3957 | 57..623 | 2835 | 100 | Plus |
| bun-RC | 1754 | CG5461-RC | 567..1133 | 57..623 | 2835 | 100 | Plus |
| bun-RO | 3490 | CG42281-RO | 807..1271 | 159..623 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12457759..12458223 | 623..159 | 2325 | 100 | Minus |
| 2L | 23513712 | 2L | 12460588..12460690 | 159..57 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:35:17 has no hits.
UFO01315.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:13 Download gff for
UFO01315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bun-RC | 559..1136 | 50..627 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:10:43 Download gff for
UFO01315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bun-RI | 540..1117 | 50..627 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:22:14 Download gff for
UFO01315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bun-RC | 559..1136 | 50..627 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:22:14 Download gff for
UFO01315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12457755..12458223 | 159..627 | 99 | <- | Minus |
| 2L | 12460589..12460698 | 50..158 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:13 Download gff for
UFO01315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12457755..12458223 | 159..627 | 99 | <- | Minus |
| arm_2L | 12460589..12460698 | 50..158 | 96 | | Minus |
