UFO01318.5prime Sequence
1198 bp (1028 high quality bases) assembled on 2008-08-22
> UFO01318.5prime
CTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCG
ACATGCAGCATCCACATCCCATTGACCAGCCCACCTACATGCCGGATGTT
CCATTCCAGCCGCTTTGGGGTCAGGAGGCTCCACCGCCGCCCATTGTTCC
ATACCAAGAGCTCATCGCCGGTTTTCCCTGCACCGACTTGTCTCTGTGGC
AGCGCTCGCAAGTAACTCCTTTGGTGCCCCAGCGTCCGTCGACAAATGGG
AGGGCCAACGGCTCCTCCAGCTCCTCGAAGAAAACGCGTCGCCGTGTGGC
ATCAATGGCCCAACGGAGAGCTGCAAATATCCGCGAACGCCGTCGCATGT
TTAACCTAAACGAGGCCTTCGACAAGTTGCGCCGCAAGGTGCCCACCTTC
GCCTACGAGAAACGACTGTCCCGCATCGAAACCCTTCGCTTGGCCATCAC
CTACATCGGATTCATGGCTGAGCTGCTGAGCGGCACGCCCTCGAACTCCC
ACAAATCGCGGTCCGACGTCTATGGGAGTATGAATGGTCACCATCAGGCG
CCACCACCGGCAATTCATCCACATCATCTGCATCCGGCGGCGGCATATCA
ACGCGATTTCGCTTCGCCCTATAATCATAGTTTGTCCGCAAGCTTTCTAG
ACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCAT
AATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGT
GCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGA
ACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGT
CCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGT
ACTGTTGTAATTCATTAGCATTCTGCCGACATGAAGCCATCACAAACGGC
ATGATGACTGATCGCAGCGCATCAGCACCTTGTCGCTTGCGTATATATTT
GCCCATGTGAAACGGGGCGAGAGTGTCATATGCCACGTTAATCAACTGTG
AACTCACCAAGATGCCTGAAACGAAAACATATCTCATAATCGTAAGAAAG
GCAGTTTCACGGTACCGGCCATTGCCAATATTGGTTAACTGCGAATCCTG
ATACTCAGCGTACGTCATGCATGGACGGTACAGGTAACAATTCCATTA
UFO01318.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer3-RA | 836 | CG6913-RA | 85..670 | 52..637 | 2930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11693576..11694021 | 637..192 | 2230 | 100 | Minus |
| 3R | 32079331 | 3R | 11694088..11694227 | 191..52 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:41:16 has no hits.
UFO01318.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:21 Download gff for
UFO01318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3-RA | 81..670 | 45..637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:10:46 Download gff for
UFO01318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3-RA | 47..636 | 45..637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:32 Download gff for
UFO01318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3-RA | 81..670 | 45..637 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:32 Download gff for
UFO01318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11693576..11694021 | 192..637 | 100 | <- | Minus |
| 3R | 11694088..11694231 | 45..191 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:21 Download gff for
UFO01318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7519298..7519743 | 192..637 | 100 | <- | Minus |
| arm_3R | 7519810..7519953 | 45..191 | 97 | | Minus |
