UFO01319.5prime Sequence
1216 bp (1033 high quality bases) assembled on 2008-08-22
> UFO01319.5prime
ATCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGT
CGACATGTCGGATCTCTTTACCACTTTCGATAGCAACGGCGTCGCCGAGC
ACCACCTGCACCACAACCACAACTCCACATCGTCCGCCAGCGGACTGCTC
CACGACCCACCCATGGCCTCGCCCTCCCAGCACAGTCCGATGACCAACAA
CAGCAACTCATCCTCGCAGAACGGCGGACCGGTTTCCGGTTTGGGTACGG
GAACGGGCCCCATATCTGGTGGTAGCAAGTCATCCAATCACACATCATCC
GCCGCCGGTTCCGAGAACACTCCCATGCTTACCAAACCGCGTCTCACAGA
GCTCGTCCGAGAGGTGGATACCACCACGCAGCTGGACGAGGATGTTGAGG
AGCTTCTGCTTCAGATCATCGACGACTTTGTCGAGGACACCGTCAAGTCG
ACGAGCGCCTTCGCCAAGCACCGAAAGTCTAACAAGATCGAGGTGCGCGA
CGTGCAGCTGCACTTTGAGCGGAAGTACAACATGTGGATACCCGGCTTCG
GTACGGACGAACTGCGTCCCTACAAGCGGGCAGCTGTCACGGAGGCGCAC
AAACAGCGCCTTGCCCTCATACGGAAAACGATCAAGAAATACGCAAGCTT
TCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATA
ATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGA
CTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGT
TCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACA
GGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATC
GCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGAGCCATCACAA
ACGGCATGATGACCTGATCGCAGCGCATCAGCACCTTGTCGCTTGCGTAT
ATATTTGCCCATGTGAAACGGGGGCGAGAGTGTCATATGCCACGTTTATC
AACTGTGAACTCACAGATGCTGAAACGAAAACATATTTCTCATAATCGTA
GAATGCAGTTTCACCGTAACGCCCAATTGCAATATGTGTGAACTGCGGAA
ATTCCTGATACTCAGCGTAACGTCACTGCCATGGACGGTACAGGGTACCA
ATTTCGATTAACAAGC
UFO01319.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taf12-RA | 1234 | CG17358-RA | 478..1065 | 55..642 | 2940 | 100 | Plus |
| Taf12-RB | 1066 | CG17358-RB | 310..897 | 55..642 | 2940 | 100 | Plus |
| Taf12-RE | 897 | CG17358-RE | 170..728 | 84..642 | 2795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11678555..11678872 | 642..325 | 1590 | 100 | Minus |
| 3R | 32079331 | 3R | 11678944..11679213 | 324..55 | 1350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:22:44 has no hits.
UFO01319.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:07 Download gff for
UFO01319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf12-RB | 306..897 | 48..642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:10:47 Download gff for
UFO01319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf12-RA | 422..1013 | 48..642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:08 Download gff for
UFO01319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf12-RB | 306..897 | 48..642 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:08 Download gff for
UFO01319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11678944..11679217 | 48..324 | 98 | | Minus |
| 3R | 11678555..11678872 | 325..642 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:07 Download gff for
UFO01319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7504277..7504594 | 325..642 | 100 | <- | Minus |
| arm_3R | 7504666..7504939 | 48..324 | 98 | | Minus |
