UFO01323.5prime Sequence
1201 bp (1040 high quality bases) assembled on 2008-08-22
> UFO01323.5prime
TGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGA
CATGGAGCGGCGCGTGAAGCTGAAGACGATCAATCCGCACATAACGTGCA
AGATCTGCGGCGGCTACTTCATCGATGCCACCACGGTGACGGAGTGTCTG
CACACATTTTGCAAGAGTTGCCTGGTGAAGCACCTGGAGGAGAAGAAGAC
CTGCCCCACCTGCGACAACATCATCCATCAGTCCCATCCCCTGCAATACA
TCAGCTTCGATCGCACCATGCAGGACATTGTGTACAAACTGGTGCCGAAA
CTGCAAGAAGATGAATCGCGCCGAGAGCGGGACTTCTACAAGAGCAGGAA
CATGCCGTGTCCCAAGGATATCACGCAGAACCACGAGGACGACAACGAGA
AGGTGATGGACGCCCACGCCGAGTCCGACTTCCATCGCCTGGACGAGCAG
GTGAACGTGTGCCTGGAGTGCATTAGCAATAACTTCAAGAACCTGCAGAG
GCGATTCATTCGCTGCAGCTCGCAGGCGACGATAACGCATCTCAAGAAGC
TGGTGGCCAAGAAGATCCTCAACGGCATCGAAAAGTACAGAGAGATCGAC
ATACTGTGCAACGAGGAGCTGCTCGGCAAGGATCACACGCTGAAGTTCGT
CTACGTGACGCGCTGGCGCTTCCGGGATCCGCCGCTTCGGCTGCAGTTTC
GTCCGCGGGTCGAGCTCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGG
GCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAA
CTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAA
AAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCT
GAGGTCATTACTGGATCTATCACAGGAGTCCAAGCGAGCTCGATATCAAA
TTACGCCCCGCCCTGCCACTCATCGCAGTACTGTGTAGTCATTAGCATCT
GCGACATGGAGCATCACAAACGCATGATGACTGATCGCAGCGGCATCAGC
ACTTGTGGCTGCGTATATATTTGCCATGTGAACGGGGGGGAGGAGTGTCT
ATTGCCACGTTAATCGAACCTGTGACTCACCAGGAATGGCTGGAGAAACA
TTTTCTATAACCGTAGCAATGCCAGTTCACGTTACGCCCAACTCTGTGCG
G
UFO01323.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)73Ah-RA | 1404 | CG4195-RA | 377..1043 | 51..717 | 3335 | 100 | Plus |
l(3)73Ah-RB | 1322 | CG4195-RB | 295..961 | 51..717 | 3335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16589245..16589530 | 309..594 | 1430 | 100 | Plus |
3L | 28110227 | 3L | 16589016..16589172 | 154..310 | 770 | 99.4 | Plus |
3L | 28110227 | 3L | 16589647..16589771 | 593..717 | 625 | 100 | Plus |
3L | 28110227 | 3L | 16588851..16588957 | 51..157 | 535 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:45:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 8763..8803 | 449..409 | 115 | 75.6 | Minus |
UFO01323.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:14 Download gff for
UFO01323.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)73Ah-RB | 295..964 | 51..721 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:10:37 Download gff for
UFO01323.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)73Ah-RA | 935..1604 | 51..721 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:23 Download gff for
UFO01323.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)73Ah-RB | 295..964 | 51..721 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:23 Download gff for
UFO01323.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16589247..16589530 | 311..594 | 100 | -> | Plus |
3L | 16589649..16589774 | 595..721 | 98 | == | Plus |
3L | 16588851..16588957 | 51..157 | 100 | -> | Plus |
3L | 16589020..16589172 | 158..310 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:14 Download gff for
UFO01323.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16581951..16582057 | 51..157 | 100 | -> | Plus |
arm_3L | 16582120..16582272 | 158..310 | 100 | -> | Plus |
arm_3L | 16582347..16582630 | 311..594 | 100 | -> | Plus |
arm_3L | 16582749..16582874 | 595..721 | 98 | == | Plus |