Clone UFO01323 Report

Search the DGRC for UFO01323

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:13
Well:23
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/Transcriptl(3)73Ah-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO01323.5prime Sequence

1201 bp (1040 high quality bases) assembled on 2008-08-22

> UFO01323.5prime
TGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGA
CATGGAGCGGCGCGTGAAGCTGAAGACGATCAATCCGCACATAACGTGCA
AGATCTGCGGCGGCTACTTCATCGATGCCACCACGGTGACGGAGTGTCTG
CACACATTTTGCAAGAGTTGCCTGGTGAAGCACCTGGAGGAGAAGAAGAC
CTGCCCCACCTGCGACAACATCATCCATCAGTCCCATCCCCTGCAATACA
TCAGCTTCGATCGCACCATGCAGGACATTGTGTACAAACTGGTGCCGAAA
CTGCAAGAAGATGAATCGCGCCGAGAGCGGGACTTCTACAAGAGCAGGAA
CATGCCGTGTCCCAAGGATATCACGCAGAACCACGAGGACGACAACGAGA
AGGTGATGGACGCCCACGCCGAGTCCGACTTCCATCGCCTGGACGAGCAG
GTGAACGTGTGCCTGGAGTGCATTAGCAATAACTTCAAGAACCTGCAGAG
GCGATTCATTCGCTGCAGCTCGCAGGCGACGATAACGCATCTCAAGAAGC
TGGTGGCCAAGAAGATCCTCAACGGCATCGAAAAGTACAGAGAGATCGAC
ATACTGTGCAACGAGGAGCTGCTCGGCAAGGATCACACGCTGAAGTTCGT
CTACGTGACGCGCTGGCGCTTCCGGGATCCGCCGCTTCGGCTGCAGTTTC
GTCCGCGGGTCGAGCTCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGG
GCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAA
CTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAA
AAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCT
GAGGTCATTACTGGATCTATCACAGGAGTCCAAGCGAGCTCGATATCAAA
TTACGCCCCGCCCTGCCACTCATCGCAGTACTGTGTAGTCATTAGCATCT
GCGACATGGAGCATCACAAACGCATGATGACTGATCGCAGCGGCATCAGC
ACTTGTGGCTGCGTATATATTTGCCATGTGAACGGGGGGGAGGAGTGTCT
ATTGCCACGTTAATCGAACCTGTGACTCACCAGGAATGGCTGGAGAAACA
TTTTCTATAACCGTAGCAATGCCAGTTCACGTTACGCCCAACTCTGTGCG
G

UFO01323.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:09
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)73Ah-RA 1404 CG4195-RA 377..1043 51..717 3335 100 Plus
l(3)73Ah-RB 1322 CG4195-RB 295..961 51..717 3335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16589245..16589530 309..594 1430 100 Plus
3L 28110227 3L 16589016..16589172 154..310 770 99.4 Plus
3L 28110227 3L 16589647..16589771 593..717 625 100 Plus
3L 28110227 3L 16588851..16588957 51..157 535 100 Plus
Blast to na_te.dros performed 2014-11-28 19:45:08
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 8763..8803 449..409 115 75.6 Minus

UFO01323.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:14 Download gff for UFO01323.5prime
Subject Subject Range Query Range Percent Splice Strand
l(3)73Ah-RB 295..964 51..721 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:10:37 Download gff for UFO01323.5prime
Subject Subject Range Query Range Percent Splice Strand
l(3)73Ah-RA 935..1604 51..721 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:23 Download gff for UFO01323.5prime
Subject Subject Range Query Range Percent Splice Strand
l(3)73Ah-RB 295..964 51..721 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:23 Download gff for UFO01323.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16589247..16589530 311..594 100 -> Plus
3L 16589649..16589774 595..721 98 == Plus
3L 16588851..16588957 51..157 100 -> Plus
3L 16589020..16589172 158..310 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:14 Download gff for UFO01323.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16581951..16582057 51..157 100 -> Plus
arm_3L 16582120..16582272 158..310 100 -> Plus
arm_3L 16582347..16582630 311..594 100 -> Plus
arm_3L 16582749..16582874 595..721 98 == Plus