UFO01324.5prime Sequence
1183 bp (1007 high quality bases) assembled on 2008-08-22
> UFO01324.5prime
GCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGAC
ATGCAGTTTCACTTTAAAGTCGCGGACGCTGAAAGGGACAGGGATAATGT
GGCTGCGACCAGCAATGCTGCCGCCAATCCGCACGCAGCCCTGCAGCCGC
AACAGCCCGTTGCCCTGGTGGAGCCCAAGGATGCACAACATGAGATACGA
TTGCAGAATATCGTGGCCACCTTCTCGGTGAACTGTGAACTGGACCTCAA
GGCAATCAACTCGCGTACGAGGAACTCGGAGTACTCGCCCAAGCGCTTTC
GTGGCGTCATCATGCGAATGCACTCGCCCAGGTGCACAGCGCTAATCTTT
CGAACGGGCAAGGTCATCTGCACGGGTGCACGAAACGAGATTGAGGCGGA
CATTGGATCGCGAAAGTTCGCACGCATCCTGCAGAAGCTGGGATTCCCCG
TAAAGTTCATGGAATACAAGCTGCAGAATATTGTGGCCACCGTTGATCTG
CGCTTCCCCATCCGCCTGGAGAACCTCAACCACGTGCACGGGCAGTTTAG
TTCCTACGAACCGGAGATGTTTCCAGGCCTAATCTATCGCATGGTCAAGC
CGCGCATCGTTCTCCTGATCTTCGTCAACGGAAAGGTTGTATTTACGGGC
GCCAAGTCGCGCAAGGACATTATGGACTGCCTGGAGGCGATATCACCTAT
TTTACTAAGTTTTCGCAAGACGGCAAGCTTTCTAGACCATTCGTTTGGCG
CGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAAT
CACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACC
AATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGA
GTTCTGAGTCATTACTGGATCTATCACAGGAGTCCAAGCGAGCTCGATAT
CAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTGTATCATTAGCA
TTCTGCGACATGCAGCATCACAAACGCATGATGACTGATCGCAGCGCATC
AGCCCTTGTTCGCTGCGTATATATTTGCCCATGTGAACGGGGCGAGAGTT
GTTCTATTGCCAGTTAATCAACTGGGACTTACCAGATGCTGACAAACATT
TCCATACGTTAGGATTGCCAGTTTCACCGGTAC
UFO01324.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:14:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trf-RA | 983 | CG7562-RA | 77..748 | 51..722 | 3360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:14:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8073197..8073713 | 206..722 | 2585 | 100 | Plus |
| 2L | 23513712 | 2L | 8072971..8073126 | 51..206 | 780 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:14:25 has no hits.
UFO01324.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:22 Download gff for
UFO01324.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trf-RA | 71..753 | 42..730 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:10:39 Download gff for
UFO01324.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trf-RA | 69..751 | 42..730 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:00 Download gff for
UFO01324.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trf-RA | 71..753 | 42..730 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:00 Download gff for
UFO01324.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8072960..8073125 | 35..205 | 95 | -> | Plus |
| 2L | 8073197..8073718 | 206..730 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:22 Download gff for
UFO01324.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8072960..8073125 | 35..205 | 95 | -> | Plus |
| arm_2L | 8073197..8073718 | 206..730 | 99 | == | Plus |
