UFO01325.5prime Sequence
1218 bp (1043 high quality bases) assembled on 2008-08-22
> UFO01325.5prime
CAGATCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATC
AGTCGACATGGTCATGGAGATGTCCAAGACGTATCAGTACCGCAAGGTGA
TGAAGCCGCTGCTGGAGCGCAAACGGCGAGCCAGGATCAACAAGTGTCTG
GACGATCTCAAGGATCTGATGGTGGAGTGCCTGCAGCAGGAGGGCGAGCA
CGTCACCCGGCTGGAGAAGGCGGATATCCTGGAGTTGACCGTGGATCACA
TGAGGAAACTCAAGCAGCGGGGTGGTCTTTCGCTGCAGGGAGTAGTGGCT
GGTGTTGGCAGCCCACCCACCTCAACCAGTACCGCCCACGTGGAGTCCTT
TCGCTCCGGCTATGTGCATGCTGCCGATCAGATTACCCAGGTCCTGCTGC
AGACACAGCAAACCGATGAGATTGGGCGCAAGATAATGAAATTCCTATCG
ACGCGACTAATTGAGCTGCAGACGCAGTTGCTCCAGCAGCAGCAGCAACA
GCAACAACACCAGCAGCAGCAAATACCGCAATCATCAGGCCGCCTAGCCT
TCCCGCTGCTGGGAGGATATGGACCGGCAGCCGCCGCTGCCGCCATTAGT
TACAGCTCCTTCCTGACCAGCAAGGACGAACTGATCGATGTGACATCCGT
CGATGGCAATGCGTTATCCGAGACGGCGTCGGTTAGCTCGCAGGAGTCCG
GCGCCTCTGAGCCCGTCTGGAGGCCCTGGGCAAGCTTTCTAGACCATTCG
TTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAA
TCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGATT
CTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCA
GATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAG
CTCGATATCAAATTACGCCCCCGCCCTGCCACTCATCGCAGTACTGTTGT
ATTCATTAGCATTCTGCGACATGCAGCATCACAAACCGCATGATGACTGA
TCGCAGCGGCATCAGCACTTGTCGCTTGCGTTTAATATTTGCCCATGGTG
AAACGGGGCAGAGTGTCATATTGCACGTAATCAAACTGTGAACTCACCAG
ATGCTGAACGAAACAATTTCCTATACCTTAGGGAATGGCAGGTTTTCACG
TAAACGGCAATCTTTGTT
UFO01325.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| E(spl)m3-HLH-RA | 1305 | CG8346-RA | 197..869 | 57..729 | 3365 | 100 | Plus |
| E(spl)mbeta-HLH-RA | 978 | CG14548-RA | 143..336 | 64..257 | 640 | 88.7 | Plus |
| E(spl)mgamma-HLH-RA | 911 | CG8333-RA | 114..280 | 67..233 | 430 | 83.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26022019..26022691 | 57..729 | 3365 | 100 | Plus |
| 3R | 32079331 | 3R | 26005688..26005881 | 257..64 | 640 | 88.7 | Minus |
| 3R | 32079331 | 3R | 25999964..26000130 | 67..233 | 430 | 83.8 | Plus |
| 3R | 32079331 | 3R | 26037178..26037291 | 67..180 | 375 | 88.6 | Plus |
| 3R | 32079331 | 3R | 25997756..25997928 | 70..242 | 235 | 75.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:01:40 has no hits.
UFO01325.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:13 Download gff for
UFO01325.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(spl)m3-HLH-RA | 189..874 | 50..737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:10:54 Download gff for
UFO01325.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLHm3-RA | 297..982 | 50..737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:47:35 Download gff for
UFO01325.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(spl)m3-HLH-RA | 189..874 | 50..737 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:47:35 Download gff for
UFO01325.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26022009..26022700 | 48..738 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:13 Download gff for
UFO01325.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21847731..21848422 | 48..738 | 98 | -> | Plus |
