UFO01326.5prime Sequence
1209 bp (1041 high quality bases) assembled on 2008-08-22
> UFO01326.5prime
AGATCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCA
GTCGACATGGATCCCTCAAATCTTGCTTTTGGTTTTCCCGGTCTCCCCAA
CCACGGACACATGCCAATACCTCCTACAGCCAATATGCTTGGTGGCCAGC
ATCCAGCACCCACCGCCAGCCCACCACAAAGCGTCCCCGGCCGTCGGACG
CCACTTGGATCGGTTGGTCTGGGTGGTTTCTATGCCCAGGGAATGGGCAT
GTCCCAGCAGCCACCGACGGATGAGAACAAACCAGGGCCCAGTGCTCCGG
AGAAGCCATTGAGTCCCACGGCCGCCGCCATCGCAGCCATTGCCATCAGT
GGTGGCACCACCACGGTGGCCGTGTCCAGTGGTGGCGCCAGCGGAAGTGG
CTCCAACAGTGGCAAGCAGAAAAACCGCCAGGGAAAGACGGTAAGGCTGA
ACATAAATGCCCGGGAACGACGAAGGATGCACGATTTGAATGATGCCCTT
GATGAGCTGAGAAGTGTGATTCCCTATGCCCATTCGCCTTCTGTGCGAAA
GCTGTCGAAAATAGCCACCTTGCTGCTGGCTAAGAACTACATTCTGATGC
AGCAAAATGCTCTCGAGGAGTTGAGAAGACTTTTGGCCTATATACAAAGC
ACCACGGGAGCAGCGCCACTGGATTTGGGTGCATTTCCGGCGGCTGCCAA
GTTGCAGGCTCTTCTTCAAGGACCTCACAACGAACCACCGACTAGCAGCA
GTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGT
CATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATC
CTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGC
AACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGA
TCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCT
GCACTCATCGCAGTACTGTGTAGTCATTAGCATCTGCGACATGCAGCATC
ACAAACGCATGATGACTGATCGCAGCGCATCAGCACTGTCGCTTGGGTTA
TATTGCCATGTGAACGGGGGAGACTGTCAATGGCAGTTAATCAACTGTAA
CTCCCAGGATGCGTGACGAGCAAATTCTCTAATAACTTAGGAATAGGGCA
GGTTTAACG
UFO01326.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:14:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oli-RC | 1068 | CG5545-RC | 101..796 | 57..752 | 3465 | 99.9 | Plus |
| Oli-RB | 1174 | CG5545-RB | 207..902 | 57..752 | 3465 | 99.9 | Plus |
| Oli-RD | 1392 | CG5545-RD | 425..1120 | 57..752 | 3465 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:14:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17590240..17590811 | 57..628 | 2845 | 99.8 | Plus |
| 2L | 23513712 | 2L | 17590870..17590995 | 627..752 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:14:39 has no hits.
UFO01326.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:25 Download gff for
UFO01326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oli-RA | 839..1537 | 57..756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:10:56 Download gff for
UFO01326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oli-RA | 734..1432 | 57..756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:09 Download gff for
UFO01326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oli-RD | 425..1123 | 57..756 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:09 Download gff for
UFO01326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17590240..17590811 | 57..628 | 99 | -> | Plus |
| 2L | 17590872..17590998 | 629..756 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:25 Download gff for
UFO01326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17590240..17590811 | 57..628 | 99 | -> | Plus |
| arm_2L | 17590872..17590998 | 629..756 | 98 | == | Plus |
