UFO01330.5prime Sequence
1212 bp (1039 high quality bases) assembled on 2008-08-22
> UFO01330.5prime
GGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACAT
GGACAAGCTGGATGCCAATCTTGAGCAGCAGTTTGATCTCAATCTCATCG
AGGCTGTCAAGCTGAACCCAGTGATATACGACAGGTCGCACTACAATTAC
AAGCACTTTGTGCGCAAGGCCCAGACCTGGAAACAAATCGCCGAAACGCT
CGGTGTGCCTGAACAAAAATGTACGAAGCGCTGGAAGAGTCTGCGCGACA
AGTTCGCCCGCGAGATGAAACTATGTCAGGAATCGCGCTGGCGTTACTTC
AAGCAGATGCAATTCCTGGTTGACTCCATCCGCCAGTATCGAGAGTCGCT
GCTCGGCAAGTGCGCCAATGGGAGTCAAAGCGCCAACCAGGTGGCCGATC
CGTCGCAGCAGCAGCAGGCGCAGCAACAGACCGTCGTGGATATATTTGCA
CAGCCCTTCAACGGCAGCGCCACAACCTCGGCCCAGGCACTGACCCATCC
GCATGAAATTACTGTCACCAGCGATGCACAGCTGGCCACTGCCGTGGGCA
AGGACCAAAAGCCATACTTCTACGAGCCGCCGCTCAAGCGAGAGCGCAGT
GAGGAGGAGCACAGCGACAACATGCTCAACACCATCAAGATTTTCCAAAA
CAACGTCTCGCAGGCGGTCAGCGCCGAGGACCAGTCGTTCGGCATGGTAG
TCACGGACATGCTCAACACGCTGGGCGTGCGACAAAAGGCAGAGGCGAAG
GTGCACATCATCAAGTATCTGACGGACATGCAGCTTCTGGCACAGCACAA
CAAGTACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAA
GTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGG
AGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAACGCCCGG
CGGCACCGAGCGTCTGACAAATCCAGATGGAGTTCTGAGTCATACTGGAT
CTATCACAGGAGTCAGCGAGCTCGATATCAATACGCCCCGCCTGCCACTC
ATCGCAGTACTGGTTATCATAGCATTCTGCGACTGAGCCATCCGACCGCA
TGATGACTGAATCGCCAGCGGCATCAGACTTGGGCTTGCGTTAAATTGCG
ATGGTACGGCAGATGTCTATGGCAGTATCCACTGTCAGCTCACCAGGAAT
TGTGCGTGACGC
UFO01330.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Adf1-RE | 1668 | CG15845-RE | 199..957 | 49..807 | 3795 | 100 | Plus |
| Adf1-RC | 1675 | CG15845-RC | 206..964 | 49..807 | 3795 | 100 | Plus |
| Adf1-RB | 1795 | CG15845-RB | 326..1084 | 49..807 | 3795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6667072..6667374 | 505..807 | 1515 | 100 | Plus |
| 2R | 25286936 | 2R | 6666719..6667013 | 211..505 | 1475 | 100 | Plus |
| 2R | 25286936 | 2R | 6662595..6662757 | 49..211 | 815 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:22:56 has no hits.
UFO01330.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:14 Download gff for
UFO01330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Adf1-RB | 319..1092 | 41..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:11:00 Download gff for
UFO01330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Adf1-RC | 200..973 | 41..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:15 Download gff for
UFO01330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Adf1-RB | 319..1092 | 41..817 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:15 Download gff for
UFO01330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6667073..6667382 | 506..817 | 98 | == | Plus |
| 2R | 6662576..6662757 | 29..211 | 93 | -> | Plus |
| 2R | 6666720..6667013 | 212..505 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:14 Download gff for
UFO01330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2550081..2550262 | 29..211 | 93 | -> | Plus |
| arm_2R | 2554225..2554518 | 212..505 | 100 | -> | Plus |
| arm_2R | 2554578..2554887 | 506..817 | 98 | == | Plus |
