UFO01333.5prime Sequence
1262 bp (1074 high quality bases) assembled on 2008-08-22
> UFO01333.5prime
ATCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGT
CGACATGATCTACACCACAACACTGATGTCCTCGCGCGGCGGCCTCATCG
GCTCGCTGATCAACAAAGTCAGGCCCCTAGCAGCCGCCAGCATCAGCAAC
ACTCCGGCGGTGCCGTCGAAGACCCTGGAGGAGCAGTTGGGCCTGCCGCC
GCGACCAAAGAAACCGCTGACTCCCTACTTTCGCTTCATGCGGGAGCAGC
GGCCCAAGCTGAAGGCTGCCAATCCCCAGATTACCACCGTCGAGGTGGTG
CGCCAGCTGTCTAAGAACTGGTCCGATGCCGATGCGCAGCTGAAGGAGCG
CCTGCAGGCCGAGTTCAAGCGGGACCAACAAATCTACGTGGAGGAGCGAA
CAAAGTACGATGCCACACTCACGGAGGAGCAGCGGGCCGAGATCAAGCAG
CTCAAGCAGGACCTCGTTGACGCCAAGGAGCGCCGCCAGCTGCGCAAGCG
GGTCAAGGAGCTGGGGCGACCCAAAAAGCCCGCTTCGGCCTTCCTGCGAT
TCATCGCCAGCGAACGTATCAACACTCCGCAGGGCGACAAGCAAACCTAC
CGCGAGTGGCACCAAAAGACCACCGCCAAGTGGACTCGCCTTTCCGACTC
CGAGAAGGAGGTCTACATGCAGGAGTCGCGCAAGGAGATGGAGCTCTACA
GGAAAGCGATTTCCGTTTGGGAGGAGAAGATGATCCGCCTGGGCCACATC
GACGTGGTGCGTCACGGAAATCTTATCGATCCACCTGAGCCAAAGCCCCG
CAAGACGCTGGCCTCCAAAGATATAGCAAGCTTTCTAGACCATTCGTTTG
GCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCAT
AATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTC
ACAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATG
GAGTTCTGAGTCATTACTGGATCTATCAACAGAGTCCAGCGAGCTCGATA
TCAAATTACGCCCCGGCCTGCCACTCATCGCAGTACTGTTTTTATTCATT
AAGCATTCTGGCCGACTGGAGCCATCAAAACCGGCATGTGTGACCTGGAA
TGCACGGCATCAGACTGTGTCGCCTGTCTATATAATTTGCAATGGGAACC
GGGGCGAGAATGTTCATATTGGCCACGTTTATATATCAACACCTGTGTGA
AAATCTCCACCA
UFO01333.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TFAM-RA | 1055 | CG4217-RA | 137..908 | 54..825 | 3860 | 100 | Plus |
| TFAM-RB | 1242 | CG4217-RB | 285..989 | 121..825 | 3525 | 100 | Plus |
| TFAM-RB | 1242 | CG4217-RB | 137..207 | 54..124 | 355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20576145..20576726 | 702..121 | 2910 | 100 | Minus |
| 3R | 32079331 | 3R | 20575498..20575623 | 825..700 | 630 | 100 | Minus |
| 3R | 32079331 | 3R | 20576804..20576874 | 124..54 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:13:54 has no hits.
UFO01333.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:07:46 Download gff for
UFO01333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TFAM-RA | 137..913 | 54..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:11:03 Download gff for
UFO01333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TFAM-RA | 146..922 | 54..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:19 Download gff for
UFO01333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TFAM-RA | 137..913 | 54..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:19 Download gff for
UFO01333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20575493..20575621 | 702..833 | 96 | <- | Minus |
| 3R | 20576146..20576724 | 123..701 | 100 | <- | Minus |
| 3R | 20576806..20576874 | 54..122 | 100 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:07:46 Download gff for
UFO01333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16401215..16401343 | 702..833 | 96 | <- | Minus |
| arm_3R | 16401868..16402446 | 123..701 | 100 | <- | Minus |
| arm_3R | 16402528..16402596 | 54..122 | 100 | == | Minus |
